Cadmium in PDB 8j16: Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius.

The structure of Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius., PDB code: 8j16 was solved by B.Maity, J.Tian, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.75 / 1.60
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	182.016, 182.016, 182.016, 90, 90, 90
R / Rfree (%)	17.6 / 20.9

The structure of Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Cadmium atom in the Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius. (pdb code 8j16). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius., PDB code: 8j16:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd207 b:22.4 occ:0.50 OD2 X:ASP80 1.7 7.4 1.0 CG X:ASP80 2.5 13.4 1.0 OD1 X:ASP80 2.5 12.9 1.0 CL X:CL210 2.6 50.4 1.0 CB X:ASP80 4.1 14.8 1.0 O X:HOH441 4.4 24.7 1.0 O X:HOH331 4.5 19.5 1.0

Cadmium binding site 2 out of 3 in the Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd208 b:21.6 occ:0.15 CD X:CD209 1.7 19.4 0.2 OE1 X:GLU130 2.4 25.7 1.0 CD X:GLU130 3.2 21.2 1.0 OE2 X:GLU130 3.4 19.4 1.0 O X:HOH325 4.0 37.0 1.0 OD1 X:ASP127 4.1 14.3 0.5 CG X:GLU130 4.6 17.5 1.0 CB X:ASP127 4.8 13.4 0.5 CG X:ASP127 4.9 14.5 0.5

Cadmium binding site 3 out of 3 in the Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius.


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius. within 5.0Å range: probe atom residue distance (Å) B Occ X:Cd209 b:19.4 occ:0.20 CD X:CD208 1.7 21.6 0.1 OE1 X:GLU130 2.6 25.7 1.0 OE2 X:GLU130 2.7 19.4 1.0 CD X:GLU130 3.0 21.2 1.0 O X:HOH325 4.0 37.0 1.0 CB X:ASP127 4.5 13.4 0.5 CB X:CYS126 4.5 12.3 1.0 CA X:ASP127 4.5 12.4 0.5 N X:ASP127 4.5 11.7 1.0 CG X:GLU130 4.6 17.5 1.0 OD1 X:ASP127 4.6 14.3 0.5 CA X:ASP127 4.6 12.0 0.5 C X:CYS126 4.7 11.6 1.0 NE2 X:HIS114 4.9 10.6 1.0 O X:CYS126 5.0 11.3 1.0

B.Maity, J.Tian, S.Abe, T.Ueno. Crystal Structure of Horse Spleen L-Ferritin at -80DEG Celsius. To Be Published.