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Cadmium in PDB 8oyl: Coiled-Coil Domain of Human Stil, Q729L Mutant

Protein crystallography data

The structure of Coiled-Coil Domain of Human Stil, Q729L Mutant, PDB code: 8oyl was solved by F.J.O.Martin, M.Shamir, D.N.Woolfson, A.Friedler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.46 / 1.92
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 24.974, 34.942, 72.321, 90, 90, 90
R / Rfree (%) 14.9 / 19

Other elements in 8oyl:

The structure of Coiled-Coil Domain of Human Stil, Q729L Mutant also contains other interesting chemical elements:

Sodium (Na) 1 atom
Chlorine (Cl) 3 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Coiled-Coil Domain of Human Stil, Q729L Mutant (pdb code 8oyl). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Coiled-Coil Domain of Human Stil, Q729L Mutant, PDB code: 8oyl:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in 8oyl

Go back to Cadmium Binding Sites List in 8oyl
Cadmium binding site 1 out of 2 in the Coiled-Coil Domain of Human Stil, Q729L Mutant


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Coiled-Coil Domain of Human Stil, Q729L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd102

b:28.2
occ:0.50
OE2 A:GLU11 2.3 21.0 1.0
OE1 A:GLU11 2.6 21.9 1.0
CD A:GLU11 2.8 20.7 1.0
CL A:CL104 2.8 31.2 1.0
CG A:GLU11 4.3 19.5 1.0
NE A:ARG7 4.4 18.9 1.0
CD A:ARG7 4.6 17.8 1.0
CG A:ARG7 4.7 16.0 1.0

Cadmium binding site 2 out of 2 in 8oyl

Go back to Cadmium Binding Sites List in 8oyl
Cadmium binding site 2 out of 2 in the Coiled-Coil Domain of Human Stil, Q729L Mutant


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Coiled-Coil Domain of Human Stil, Q729L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd103

b:50.9
occ:1.00
OD1 A:ASP4 2.4 26.7 1.0
CL A:CL106 2.8 59.6 1.0
OD2 A:ASP4 3.0 29.1 1.0
CG A:ASP4 3.1 24.0 1.0
CL A:CL105 3.6 79.6 1.0
NH1 A:ARG7 4.0 19.4 1.0
NH2 A:ARG7 4.5 21.4 1.0
CB A:ASP4 4.6 21.3 1.0
O A:HOH208 4.7 27.8 1.0
CZ A:ARG7 4.7 19.6 1.0
O A:HOH203 4.7 25.9 1.0

Reference:

M.Shamir, F.J.O.Martin, D.N.Woolfson, A.Friedler. Molecular Mechanism of Stil Coiled-Coil Domain Oligomerization Int J Mol Sci 2023.
ISSN: ESSN 1422-0067
DOI: 10.3390/IJMS241914616
Page generated: Thu Dec 28 01:56:19 2023

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