Cadmium in PDB 8prp: The Structure of NVBAGEL2 in the Presence of Cd(II)

The structure of The Structure of NVBAGEL2 in the Presence of Cd(II), PDB code: 8prp was solved by L.Vandebroek, A.R.D.Voet, X.Y.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.70 / 2.82
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	54.97, 54.97, 109.6, 90, 90, 90
R / Rfree (%)	23 / 31.3

The binding sites of Cadmium atom in the The Structure of NVBAGEL2 in the Presence of Cd(II) (pdb code 8prp). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the The Structure of NVBAGEL2 in the Presence of Cd(II), PDB code: 8prp:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the The Structure of NVBAGEL2 in the Presence of Cd(II)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of The Structure of NVBAGEL2 in the Presence of Cd(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd101 b:68.0 occ:0.50 NE2 A:HIS24 2.3 55.1 1.0 O A:HOH202 2.3 60.2 1.0 CD2 A:HIS24 3.2 53.7 1.0 CE1 A:HIS24 3.3 58.3 1.0 OG A:SER44 3.8 61.9 1.0 ND1 A:HIS24 4.4 59.1 1.0 CG A:HIS24 4.4 55.6 1.0 N A:SER44 4.4 48.3 1.0 O A:ASN22 4.5 48.4 1.0 CB A:SER44 4.7 47.3 1.0 CA A:GLY43 4.9 47.8 1.0 CA A:SER44 5.0 47.8 1.0

Cadmium binding site 2 out of 2 in the The Structure of NVBAGEL2 in the Presence of Cd(II)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of The Structure of NVBAGEL2 in the Presence of Cd(II) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd102 b:72.5 occ:0.50 NE2 A:HIS64 1.9 60.5 1.0 CE1 A:HIS64 2.6 50.7 1.0 CD2 A:HIS64 3.1 52.2 1.0 ND1 A:HIS64 3.8 53.4 1.0 CG A:HIS64 4.1 49.2 1.0 O A:ASN62 4.4 47.7 1.0

L.Vandebroek, A.R.D.Voet, X.Y.Lee. The Structure of NVBAGEL2 in the Presence of Cd(II) To Be Published.