Cadmium in PDB 8twq: Structure of Bacteriophage Lambda Rexa Protein

The structure of Structure of Bacteriophage Lambda Rexa Protein, PDB code: 8twq was solved by M.C.Adams, J.S.Chappie, C.J.Schiltz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	53.69 / 2.05
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	55.649, 55.649, 322.121, 90, 90, 120
R / Rfree (%)	20.6 / n/a

The binding sites of Cadmium atom in the Structure of Bacteriophage Lambda Rexa Protein (pdb code 8twq). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 9 binding sites of Cadmium where determined in the Structure of Bacteriophage Lambda Rexa Protein, PDB code: 8twq:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Cadmium binding site 1 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd305 b:103.5 occ:1.00 OD1 A:ASN60 2.6 45.8 1.0 CG A:ASN60 3.4 41.4 1.0 ND2 A:ASN60 3.9 42.2 1.0 N A:ASN60 4.1 38.2 1.0 N A:ASP61 4.5 39.6 1.0 CB A:ASN60 4.5 39.8 1.0 CA A:ASN60 4.6 40.3 1.0 C A:ASN60 4.6 41.8 1.0 OG1 A:THR59 4.7 38.3 1.0 CE2 A:PHE90 4.9 34.3 1.0

Cadmium binding site 2 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd306 b:113.4 occ:1.00 OD2 A:ASP222 2.7 70.6 1.0 NE2 A:HIS231 2.9 53.6 1.0 CD2 A:HIS231 3.5 49.4 1.0 CG A:ASP222 3.5 69.1 1.0 OD1 A:ASP222 3.6 69.2 1.0 CE1 A:HIS231 4.0 53.0 1.0 CG A:HIS231 4.8 45.0 1.0 CB A:ASP222 4.9 68.5 1.0

Cadmium binding site 3 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd305 b:99.4 occ:1.00 OD1 B:ASP17 2.9 49.2 1.0 OD2 B:ASP17 3.4 48.8 1.0 CG B:ASP17 3.5 47.1 1.0 CB B:ASP17 4.9 43.0 1.0

Cadmium binding site 4 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd306 b:97.4 occ:1.00 NE2 B:HIS150 2.8 42.1 1.0 O B:HOH494 2.8 37.1 1.0 O B:HOH520 2.9 35.5 1.0 CD2 B:HIS150 3.6 38.5 1.0 CE1 B:HIS150 3.8 41.0 1.0 CB B:ALA224 4.3 41.6 1.0 CA B:ALA224 4.4 40.0 1.0 CG B:HIS150 4.8 36.8 1.0 ND1 B:HIS150 4.9 40.7 1.0 N B:GLY225 5.0 41.2 1.0

Cadmium binding site 5 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd307 b:96.4 occ:1.00 SG B:CYS269 3.1 48.7 1.0 CA B:CYS269 3.4 38.1 1.0 CD B:CD311 3.5 47.1 0.4 N B:CYS269 3.7 37.6 1.0 OE1 B:GLU230 3.7 47.9 1.0 CB B:CYS269 3.8 35.4 1.0 CD B:GLU230 4.1 48.4 1.0 OE2 B:GLU230 4.2 53.2 1.0 C B:GLU268 4.2 39.4 1.0 O B:GLU268 4.4 41.5 1.0 C B:CYS269 4.7 38.2 1.0 CB B:GLU268 4.8 40.8 1.0 O B:CYS269 5.0 35.7 1.0

Cadmium binding site 6 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd308 b:80.5 occ:1.00 SG B:CYS258 2.7 36.8 1.0 O B:HOH422 3.0 45.9 1.0 O B:HOH521 3.0 46.1 1.0 CB B:CYS258 3.2 34.1 1.0 CA B:CYS258 3.9 33.2 1.0 CB B:SER234 4.0 47.5 1.0 O B:HOH405 4.4 53.9 1.0 CE1 B:TYR232 4.4 36.3 1.0 CD1 B:TYR232 4.6 34.0 1.0 OG B:SER234 4.7 51.8 1.0 CD1 B:LEU239 4.7 40.7 1.0 C B:CYS258 4.8 34.2 1.0 O B:CYS258 4.9 35.1 1.0 N B:CYS258 5.0 31.4 1.0

Cadmium binding site 7 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd309 b:50.5 occ:0.50 OE1 B:GLU223 2.6 44.9 1.0 OE2 B:GLU223 2.8 47.8 1.0 CD B:GLU223 3.0 45.0 1.0 O B:HOH444 3.9 43.9 1.0 O B:HIS148 3.9 34.0 1.0 O B:ASP222 4.2 37.0 1.0 O B:HOH484 4.3 37.3 1.0 CG B:GLU223 4.5 41.2 1.0

Cadmium binding site 8 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd310 b:53.4 occ:1.00 NE2 B:HIS231 2.6 32.0 1.0 OD2 B:ASP222 2.6 46.9 1.0 OD1 B:ASP222 2.9 36.9 1.0 CG B:ASP222 3.0 37.6 1.0 NH2 B:ARG139 3.0 37.1 1.0 CZ B:ARG139 3.2 41.0 1.0 CD2 B:HIS231 3.3 32.7 1.0 NH1 B:ARG139 3.4 45.0 1.0 CE1 B:HIS231 3.6 30.5 1.0 NE B:ARG139 3.8 48.9 1.0 CB B:ASP222 4.3 33.2 1.0 CG B:HIS231 4.6 30.7 1.0 CD B:ARG139 4.6 44.0 1.0 ND1 B:HIS231 4.7 29.0 1.0 CB B:ARG139 4.9 34.1 1.0

Cadmium binding site 9 out of 9 in the Structure of Bacteriophage Lambda Rexa Protein


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Structure of Bacteriophage Lambda Rexa Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd311 b:47.1 occ:0.39 SG B:CYS269 2.8 48.7 1.0 O B:ASP265 2.8 34.0 1.0 OE2 B:GLU230 3.1 53.2 1.0 C B:ASP265 3.3 38.9 1.0 CB B:ASP265 3.5 40.8 1.0 CD B:CD307 3.5 96.4 1.0 SE B:MSE138 3.6 54.4 1.0 CA B:ASP265 3.6 39.6 1.0 CB B:CYS269 3.7 35.4 1.0 CD B:GLU230 3.7 48.4 1.0 N B:CYS269 3.8 37.6 1.0 O B:HOH479 3.9 46.3 1.0 CG B:ASP265 4.0 43.4 1.0 OD2 B:ASP265 4.0 42.1 1.0 CG B:MSE138 4.1 37.9 1.0 CA B:CYS269 4.2 38.1 1.0 CG B:GLU230 4.3 39.4 1.0 CE B:MSE138 4.3 41.3 1.0 OE1 B:GLU230 4.3 47.9 1.0 N B:ILE266 4.3 37.2 1.0 CB B:GLU268 4.4 40.8 1.0 C B:GLU268 4.8 39.4 1.0 OD1 B:ASP265 4.8 45.3 1.0 CA B:ILE266 4.9 37.5 1.0 CB B:GLU230 5.0 33.8 1.0

M.C.Adams, C.J.Schiltz, J.Sun, C.J.Hosford, V.M.Johnson, H.Pan, P.P.Borbat, J.H.Freed, L.C.Thomason, C.Court, D.L.Court, J.S.Chappie. The Crystal Structure of Bacteriophage Lambda Rexa Provides Novel Insights Into the Dna Binding Properties of Rex-Like Phage Exclusion Proteins. Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962
PubMed: 38554102
DOI: 10.1093/NAR/GKAE212