Cadmium in PDB 8uf6: Structure of Trek-1(K2P2.1) with ML336

The structure of Structure of Trek-1(K2P2.1) with ML336, PDB code: 8uf6 was solved by M.Lolicato, A.Mondal, D.L.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.90 / 2.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.953, 118.597, 130.873, 90, 90, 90
R / Rfree (%)	26.7 / 31.3

The structure of Structure of Trek-1(K2P2.1) with ML336 also contains other interesting chemical elements:

Chlorine	(Cl)	4 atoms
Potassium	(K)	6 atoms

The binding sites of Cadmium atom in the Structure of Trek-1(K2P2.1) with ML336 (pdb code 8uf6). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Structure of Trek-1(K2P2.1) with ML336, PDB code: 8uf6:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd406 b:220.6 occ:1.00 NE2 B:GLN123 3.0 192.9 1.0 CD B:GLN123 3.4 195.6 1.0 OE1 B:GLN123 4.0 189.0 1.0 OD1 B:ASP263 4.0 145.8 1.0 CG B:GLN123 4.0 189.0 1.0 O B:VAL124 4.4 160.0 1.0 CG1 B:ILE115 4.5 201.9 1.0 CD1 B:ILE115 4.6 177.0 1.0 CG B:ASP263 4.8 148.9 1.0 C B:GLY113 5.0 184.2 1.0

Cadmium binding site 2 out of 2 in the Structure of Trek-1(K2P2.1) with ML336


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Structure of Trek-1(K2P2.1) with ML336 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd407 b:132.2 occ:1.00 OE1 B:GLU309 2.5 135.9 1.0 CE1 B:HIS313 2.8 169.2 1.0 NE2 B:HIS313 2.9 183.9 1.0 ND1 B:HIS313 3.4 166.3 1.0 CD2 B:HIS313 3.6 155.2 1.0 CD B:GLU309 3.7 163.3 1.0 O B:GLU309 3.9 171.4 1.0 CG B:HIS313 3.9 133.7 1.0 CB B:GLU309 4.3 141.0 1.0 CA B:GLU309 4.4 157.5 1.0 OE2 B:GLU309 4.4 197.3 1.0 C B:GLU309 4.5 153.2 1.0 CG B:GLU309 4.6 150.6 1.0 CB B:ALA312 4.7 173.8 1.0 N B:HIS313 4.8 165.8 1.0

M.Lolicato, A.Mondal, D.L.Minor. Structure of Trek-1(K2P2.1) with ML336 To Be Published.