Cadmium in PDB 8y41: Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa

The structure of Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa, PDB code: 8y41 was solved by W.Tsui, W.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.49 / 2.58
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	51.726, 57.335, 57.483, 67.92, 63.35, 90.02
R / Rfree (%)	24.8 / 26.1

The binding sites of Cadmium atom in the Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa (pdb code 8y41). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa, PDB code: 8y41:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in the Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd302 b:44.1 occ:1.00 OE1 A:GLU133 2.5 40.7 1.0 OE1 A:GLU136 2.7 34.4 1.0 OE2 A:GLU133 2.7 36.0 1.0 CD A:GLU133 2.9 37.8 1.0 OE2 A:GLU136 3.0 35.7 1.0 CD A:GLU136 3.1 35.1 1.0 NZ A:LYS132 4.2 36.4 1.0 CG A:GLU136 4.4 33.0 1.0 CG A:GLU133 4.5 36.8 1.0 CE A:LYS132 4.6 38.8 1.0 CB A:GLU136 4.9 27.4 1.0

Cadmium binding site 2 out of 4 in the Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd303 b:62.6 occ:1.00 NE2 A:HIS206 2.7 50.1 1.0 CE1 A:HIS206 3.4 41.7 1.0 OG A:SER134 3.5 35.6 1.0 CD2 A:HIS206 3.6 43.0 1.0 CB A:SER134 4.4 34.6 1.0 ND1 A:HIS206 4.4 37.4 1.0 CG A:HIS206 4.5 43.8 1.0 NH1 A:ARG137 4.8 38.3 1.0

Cadmium binding site 3 out of 4 in the Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa within 5.0Å range: probe atom residue distance (Å) B Occ D:Cd302 b:53.4 occ:1.00 OE1 D:GLU134 2.7 39.1 1.0 CD D:GLU134 3.6 40.6 1.0 OE2 D:GLU134 4.2 41.0 1.0 CG D:GLU134 4.4 38.9 1.0 CD D:LYS130 4.5 30.0 1.0 O D:LYS130 4.5 37.8 1.0 CE D:LYS130 4.7 33.8 1.0

Cadmium binding site 4 out of 4 in the Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa within 5.0Å range: probe atom residue distance (Å) B Occ D:Cd303 b:67.5 occ:1.00 NE2 D:HIS204 2.3 54.4 1.0 CE1 D:HIS204 3.1 44.2 1.0 CD2 D:HIS204 3.4 46.8 1.0 ND1 D:HIS204 4.3 43.9 1.0 CB D:SER132 4.3 33.8 1.0 CG D:HIS204 4.5 47.8 1.0 NH1 D:ARG135 4.9 45.2 1.0 OG D:SER132 4.9 45.6 1.0

W.Tsui, W.Shi. Vcfadrqm, Mutant Protein of Fatty Acid Responsive Transcription Factor From Vibrio Cholerae, in Complex with Oleoyl-Coa To Be Published.