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Cadmium in PDB 9g3u: Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperatures. Room Temperature Data Collection

Protein crystallography data

The structure of Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperatures. Room Temperature Data Collection, PDB code: 9g3u was solved by L.Di Costanzo, S.La Gatta, M.Chino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.86 / 2.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 35.029, 57.107, 19.598, 90, 90, 90
R / Rfree (%) 17.3 / n/a

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperatures. Room Temperature Data Collection (pdb code 9g3u). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperatures. Room Temperature Data Collection, PDB code: 9g3u:

Cadmium binding site 1 out of 1 in 9g3u

Go back to Cadmium Binding Sites List in 9g3u
Cadmium binding site 1 out of 1 in the Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperatures. Room Temperature Data Collection


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperatures. Room Temperature Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd101

b:52.0
occ:1.00
SG C:CYS2 2.6 31.0 1.0
SG C:CYS17 2.7 21.9 1.0
SG C:CYS20 2.7 29.8 1.0
SG C:CYS5 2.8 53.1 1.0
HB3 C:CYS2 3.1 34.0 1.0
HB3 C:CYS17 3.1 17.0 1.0
H C:CYS20 3.1 32.9 1.0
HB3 C:CYS20 3.2 32.9 1.0
CB C:CYS2 3.3 28.4 1.0
CB C:CYS17 3.3 14.2 1.0
HB2 C:CYS2 3.3 34.0 1.0
HB2 C:CYS17 3.4 17.0 1.0
H C:CYS5 3.5 47.9 1.0
CB C:CYS20 3.5 27.5 1.0
HB3 C:CYS5 3.6 67.3 1.0
HB3 C:ALA7 3.7 35.5 1.0
CB C:CYS5 3.8 56.2 1.0
HB3 C:ALA22 3.8 34.8 1.0
HB3 C:ASN19 3.8 62.5 1.0
N C:CYS20 3.9 27.5 1.0
N C:CYS5 4.0 40.0 1.0
H C:ALA7 4.1 35.1 1.0
H C:ALA22 4.1 46.6 1.0
HB2 C:ASP4 4.2 25.0 1.0
CA C:CYS20 4.2 29.8 1.0
HB2 C:ALA22 4.3 34.8 1.0
HD21 C:ASN19 4.3 53.9 1.0
HB2 C:CYS20 4.3 32.9 1.0
CA C:CYS5 4.4 51.2 1.0
HB2 C:ALA7 4.5 35.5 1.0
H C:GLY6 4.5 53.6 1.0
H C:ASP4 4.5 29.4 1.0
H C:GLY21 4.5 22.2 1.0
CB C:ALA22 4.5 29.1 1.0
CB C:ALA7 4.5 29.7 1.0
H C:ASN19 4.6 32.2 1.0
HB2 C:CYS5 4.6 67.3 1.0
HB3 C:ASP4 4.6 25.0 1.0
CA C:CYS2 4.7 14.9 1.0
C C:ASP4 4.7 33.9 1.0
CA C:CYS17 4.7 21.9 1.0
CB C:ASN19 4.8 52.1 1.0
CB C:ASP4 4.8 20.9 1.0
C C:CYS20 4.8 33.7 1.0
N C:GLY21 4.9 18.6 1.0
N C:ALA7 4.9 29.3 1.0
N C:GLY6 4.9 44.8 1.0
N C:ALA22 4.9 39.0 1.0
C C:CYS5 5.0 26.4 1.0
C C:ASN19 5.0 30.6 1.0

Reference:

L.Di Costanzo, M.Chino. Structural Insights Into the Temperature-Dependent Dynamics of A Miniaturized Electron-Transfer Protein To Be Published.
Page generated: Thu Jul 10 16:03:16 2025

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