Cadmium in PDB 9j00: Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu

The structure of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu, PDB code: 9j00 was solved by R.Goswami, S.Biswas, S.Chakraborti, Y.Manickam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	78.97 / 1.83
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.504, 37.345, 79.437, 90, 96.23, 90
R / Rfree (%)	19 / 23.6

The structure of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu also contains other interesting chemical elements:

Chlorine

(Cl)

7 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Cadmium atom in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu (pdb code 9j00). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 16 binding sites of Cadmium where determined in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu, PDB code: 9j00:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:22.0 occ:1.00 OD2 A:ASP40 2.4 21.4 1.0 CL A:CL206 2.5 20.3 0.8 O A:HOH317 2.5 19.9 1.0 CL A:CL207 2.5 20.1 1.0 OD1 A:ASP40 3.1 18.5 1.0 CG A:ASP40 3.1 19.8 1.0 N A:ASP10 4.0 16.4 1.0 O A:HOH309 4.2 41.6 1.0 O A:LYS8 4.3 21.2 1.0 CB A:ASP40 4.5 15.6 1.0 CA A:ASP10 4.6 17.5 1.0 O A:HOH323 4.9 26.4 1.0 CA A:TYR9 4.9 21.2 1.0 C A:TYR9 4.9 16.6 1.0 N A:GLY11 5.0 19.5 1.0

Cadmium binding site 2 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:27.5 occ:0.96 OD2 A:ASP21 2.3 25.2 1.0 CL A:CL208 2.5 40.6 0.9 CG A:ASP21 3.2 24.4 1.0 OD1 A:ASP21 3.3 24.5 1.0 O A:HOH347 4.5 35.9 1.0 CB A:ASP21 4.5 23.9 1.0

Cadmium binding site 3 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:58.2 occ:0.58 O A:GLU92 2.5 25.4 1.0 OE1 A:GLU97 2.8 42.0 0.4 OE2 A:GLU97 3.0 42.7 0.8 CD A:GLU97 3.2 42.0 0.2 C A:GLU92 3.5 29.5 1.0 CA A:GLU92 4.1 29.2 1.0 O A:HOH302 4.3 43.1 1.0 CB A:GLU92 4.3 31.4 1.0 CB A:ASN93 4.5 28.0 1.0 N A:ASN93 4.6 25.2 1.0 CG A:GLU97 4.7 41.2 1.0 CA A:ASN93 4.9 25.8 1.0 C A:ASN93 4.9 28.8 1.0

Cadmium binding site 4 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:48.6 occ:0.75 O A:HOH338 2.5 41.3 1.0 OD2 A:ASP13 2.6 40.3 1.0 O A:HOH358 2.6 24.2 0.7 OD1 A:ASP15 2.7 47.9 1.0 OD1 A:ASP13 2.7 41.9 1.0 CG A:ASP13 3.0 37.6 1.0 CG A:ASP15 3.6 46.1 1.0 CB A:ASP15 3.8 38.0 1.0 N A:ASP15 4.2 24.4 1.0 O A:HOH353 4.4 37.8 1.0 CB A:ASP13 4.5 27.8 1.0 CA A:ASP15 4.7 32.6 1.0 OD2 A:ASP15 4.8 50.1 1.0 N A:LEU14 4.8 22.2 1.0

Cadmium binding site 5 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd205 b:38.2 occ:0.83 OE2 A:GLU80 2.5 41.0 0.9 O A:HOH348 2.6 42.9 1.0 OE1 A:GLU80 3.0 41.4 0.8 CD A:GLU80 3.1 39.5 0.4 CG A:GLU80 4.6 33.5 1.0 O A:HOH346 4.7 24.9 1.0

Cadmium binding site 6 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd210 b:19.1 occ:0.99 OD2 A:ASP33 2.3 18.8 1.0 OD2 B:ASP40 2.4 19.8 1.0 O A:HOH344 2.5 18.1 1.0 O B:HOH326 2.6 21.0 1.0 CL B:CL207 2.6 18.3 1.0 OD1 A:ASP33 2.7 17.1 1.0 CG A:ASP33 2.8 17.4 1.0 CG B:ASP40 3.0 16.2 1.0 OD1 B:ASP40 3.0 17.9 1.0 N B:ASP10 4.0 18.1 1.0 NZ A:LYS88 4.2 33.8 1.0 CB A:ASP33 4.3 15.5 1.0 NZ A:LYS45 4.4 17.6 1.0 O B:HOH337 4.4 35.7 1.0 O B:LYS8 4.4 17.9 1.0 O B:HOH379 4.4 30.5 0.4 O B:HOH322 4.4 18.1 1.0 CB B:ASP40 4.5 11.5 1.0 O B:HOH379 4.5 28.2 0.6 CE A:LYS88 4.6 31.0 1.0 CE A:LYS45 4.6 19.2 1.0 CD A:LYS45 4.7 19.9 1.0 CA B:ASP10 4.7 17.0 1.0 CA B:TYR9 4.8 14.9 1.0 C B:TYR9 4.8 14.4 1.0

Cadmium binding site 7 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd201 b:53.7 occ:0.49 O B:GLU92 2.6 25.4 1.0 OE1 B:GLU97 2.7 47.4 1.0 OE2 B:GLU97 2.9 49.6 1.0 CD B:GLU97 3.1 45.5 1.0 C B:GLU92 3.7 27.1 1.0 CB B:GLU92 4.1 30.2 1.0 CA B:GLU92 4.2 28.1 1.0 CD2 B:LEU94 4.6 29.5 1.0 CG B:GLU97 4.6 41.2 1.0 N B:ASN93 4.8 23.6 1.0 CB B:ASN93 4.8 23.4 1.0 C B:ASN93 4.9 21.1 1.0 O B:ASN93 5.0 23.7 1.0

Cadmium binding site 8 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd202 b:50.8 occ:0.63 O B:HOH379 2.5 30.5 0.4 OE1 B:GLU43 2.5 45.6 1.0 O B:HOH378 2.6 45.6 1.0 O A:HOH363 2.7 41.9 1.0 OE2 B:GLU43 2.7 39.8 1.0 O A:HOH361 2.7 31.6 1.0 CD B:GLU43 2.9 37.3 1.0 O B:HOH384 3.7 54.8 1.0 O B:HOH313 4.2 47.3 1.0 O A:HOH354 4.2 41.6 1.0 O B:HOH379 4.3 28.2 0.6 OD2 A:ASP33 4.4 18.8 1.0 CG B:GLU43 4.4 24.8 1.0 O B:HOH355 4.5 31.8 1.0 CG B:GLN63 4.8 35.5 1.0 O B:HOH337 4.9 35.7 1.0 OD1 B:ASP40 5.0 17.9 1.0

Cadmium binding site 9 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd203 b:34.2 occ:0.88 O B:HOH308 2.4 12.9 0.5 O B:HOH376 2.5 30.4 1.0 OD2 B:ASP15 2.5 35.8 1.0 OD1 B:ASP13 2.6 34.1 1.0 O B:HOH344 2.7 38.7 0.9 OXT B:GLU111 2.7 30.8 0.5 OD2 B:ASP13 2.7 37.6 1.0 CG B:ASP13 3.0 32.9 1.0 O B:HOH312 3.1 51.4 1.0 O B:HOH324 3.2 43.4 1.0 C B:GLU111 3.5 33.2 1.0 CG B:ASP15 3.6 33.4 1.0 O B:GLU111 3.7 29.9 0.7 CB B:ASP15 3.9 27.2 1.0 N B:ASP15 4.1 20.8 1.0 O B:THR7 4.4 20.4 1.0 CB B:ASP13 4.5 25.0 1.0 CE B:LYS69 4.6 29.8 1.0 CA B:ASP15 4.6 21.2 1.0 N B:LEU14 4.7 14.8 1.0 OD1 B:ASP15 4.7 38.0 1.0 NZ B:LYS69 4.7 28.2 1.0 CA B:GLU111 4.8 34.8 1.0

Cadmium binding site 10 out of 16 in the Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structure Sensory Appendage Protein 2 From Anopheles Culicifacies in Space Group P21 with Three Molecules Per Asu within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd204 b:26.8 occ:1.00 OE2 B:GLU76 2.4 26.2 1.0 CL B:CL208 2.6 22.6 1.0 OE1 B:GLU76 2.8 25.8 1.0 CD B:GLU76 2.9 23.7 1.0 NZ B:LYS109 4.0 18.8 1.0 CE B:LYS109 4.2 17.9 1.0 CG B:GLU76 4.4 20.1 1.0 NH1 B:ARG100 4.4 21.5 1.0 O B:HOH303 4.6 45.8 1.0 NH2 B:ARG100 4.6 21.0 1.0 O B:HOH317 4.7 33.0 1.0 CG B:GLN104 4.9 30.6 1.0 O B:GLN104 5.0 23.9 1.0 CA B:GLN104 5.0 22.3 1.0

S.Biswas, R.Goswami, R.L.Barbosa, S.Sung, J.A.Marquez, S.Chakraborti, Y.Manickam. Crystal Structure and Ligand Binding Studies of Chemosensory and Sensory Appendage Proteins To Be Published.