Cadmium in PDB 1m0j: Solution Structure of the Beta Domain of MT_NC

The binding sites of Cadmium atom in the Solution Structure of the Beta Domain of MT_NC (pdb code 1m0j). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Solution Structure of the Beta Domain of MT_NC, PDB code: 1m0j:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Solution Structure of the Beta Domain of MT_NC


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Solution Structure of the Beta Domain of MT_NC within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd101 b:0.0 occ:1.00 SG A:CYS31 2.3 0.0 1.0 SG A:CYS18 2.5 0.0 1.0 SG A:CYS20 2.6 0.0 1.0 SG A:CYS12 2.6 0.0 1.0 HB2 A:CYS20 3.0 0.0 1.0 HB2 A:CYS18 3.2 0.0 1.0 CB A:CYS20 3.4 0.0 1.0 HB3 A:CYS12 3.4 0.0 1.0 CB A:CYS18 3.5 0.0 1.0 CB A:CYS31 3.5 0.0 1.0 HB2 A:CYS31 3.6 0.0 1.0 CB A:CYS12 3.6 0.0 1.0 H A:ASN19 3.7 0.0 1.0 HB3 A:CYS31 3.7 0.0 1.0 SG A:CYS29 3.7 0.0 1.0 H A:CYS20 3.9 0.0 1.0 CD A:CD103 3.9 0.0 1.0 CD A:CD102 3.9 0.0 1.0 HB3 A:CYS20 4.1 0.0 1.0 HA A:CYS18 4.1 0.0 1.0 HB2 A:CYS12 4.2 0.0 1.0 N A:CYS20 4.2 0.0 1.0 CA A:CYS18 4.3 0.0 1.0 HB3 A:CYS18 4.4 0.0 1.0 N A:ASN19 4.4 0.0 1.0 CA A:CYS20 4.4 0.0 1.0 SG A:CYS34 4.7 0.0 1.0 HA A:CYS12 4.8 0.0 1.0 C A:CYS18 4.8 0.0 1.0 CA A:CYS12 4.8 0.0 1.0 HA A:CYS20 4.9 0.0 1.0 CA A:CYS31 4.9 0.0 1.0 H A:SER30 4.9 0.0 1.0 H A:CYS31 4.9 0.0 1.0 C A:ASN19 5.0 0.0 1.0 SG A:CYS26 5.0 0.0 1.0

Cadmium binding site 2 out of 3 in the Solution Structure of the Beta Domain of MT_NC


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Solution Structure of the Beta Domain of MT_NC within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd102 b:0.0 occ:1.00 SG A:CYS24 2.3 0.0 1.0 SG A:CYS34 2.5 0.0 1.0 SG A:CYS29 2.6 0.0 1.0 SG A:CYS20 2.6 0.0 1.0 HB3 A:CYS34 3.3 0.0 1.0 CB A:CYS34 3.3 0.0 1.0 HB2 A:CYS34 3.4 0.0 1.0 HB3 A:CYS29 3.4 0.0 1.0 HB2 A:CYS24 3.4 0.0 1.0 HB3 A:CYS20 3.4 0.0 1.0 CB A:CYS29 3.4 0.0 1.0 CB A:CYS24 3.5 0.0 1.0 HB2 A:CYS29 3.6 0.0 1.0 CB A:CYS20 3.6 0.0 1.0 CD A:CD101 3.9 0.0 1.0 HA A:CYS24 3.9 0.0 1.0 SG A:CYS26 4.0 0.0 1.0 HB2 A:CYS31 4.1 0.0 1.0 SG A:CYS31 4.1 0.0 1.0 HB2 A:CYS20 4.2 0.0 1.0 CD A:CD103 4.2 0.0 1.0 H A:CYS31 4.3 0.0 1.0 HB3 A:CYS24 4.3 0.0 1.0 CA A:CYS24 4.3 0.0 1.0 H A:SER30 4.6 0.0 1.0 H A:THR25 4.7 0.0 1.0 CB A:CYS31 4.7 0.0 1.0 HA A:CYS20 4.7 0.0 1.0 CA A:CYS34 4.8 0.0 1.0 CA A:CYS20 4.8 0.0 1.0 CA A:CYS29 4.9 0.0 1.0

Cadmium binding site 3 out of 3 in the Solution Structure of the Beta Domain of MT_NC


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Solution Structure of the Beta Domain of MT_NC within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd103 b:0.0 occ:1.00 SG A:CYS10 2.3 0.0 1.0 SG A:CYS12 2.3 0.0 1.0 SG A:CYS26 2.6 0.0 1.0 SG A:CYS29 2.6 0.0 1.0 H A:CYS12 3.1 0.0 1.0 HB2 A:CYS26 3.2 0.0 1.0 HB3 A:CYS10 3.3 0.0 1.0 HA A:CYS29 3.3 0.0 1.0 HB2 A:CYS12 3.4 0.0 1.0 CB A:CYS10 3.5 0.0 1.0 CB A:CYS12 3.5 0.0 1.0 CB A:CYS26 3.5 0.0 1.0 HB2 A:CYS29 3.6 0.0 1.0 CB A:CYS29 3.6 0.0 1.0 CD A:CD101 3.9 0.0 1.0 N A:CYS12 3.9 0.0 1.0 HB3 A:CYS26 4.0 0.0 1.0 CA A:CYS29 4.0 0.0 1.0 HB2 A:CYS10 4.2 0.0 1.0 CD A:CD102 4.2 0.0 1.0 H A:GLU11 4.3 0.0 1.0 SG A:CYS20 4.3 0.0 1.0 HB3 A:CYS12 4.3 0.0 1.0 CA A:CYS12 4.3 0.0 1.0 HB2 A:GLU11 4.4 0.0 1.0 SG A:CYS31 4.5 0.0 1.0 H A:SER30 4.5 0.0 1.0 N A:GLU11 4.5 0.0 1.0 CA A:CYS10 4.6 0.0 1.0 HB3 A:CYS29 4.6 0.0 1.0 O A:THR27 4.6 0.0 1.0 C A:CYS10 4.7 0.0 1.0 HA A:CYS12 4.8 0.0 1.0 CA A:CYS26 4.8 0.0 1.0 HA A:CYS10 4.8 0.0 1.0 N A:CYS29 4.8 0.0 1.0

C.Capasso, V.Carginale, O.Crescenzi, D.Di Maro, E.Parisi, R.Spadaccini, P.A.Temussi. Solution Structure of MT_NC, A Novel Metallothionein From the Antarctic Fish Notothenia Coriiceps. Structure V. 11 435 2003.
ISSN: ISSN 0969-2126
PubMed: 12679021
DOI: 10.1016/S0969-2126(03)00044-3