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Cadmium in PDB 1wqf: Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis

Protein crystallography data

The structure of Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis, PDB code: 1wqf was solved by K.Saikrishnan, S.K.Kalapala, U.Varshney, M.Vijayan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.160, 33.792, 62.549, 90.00, 112.32, 90.00
R / Rfree (%) 18.3 / 24.5

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis (pdb code 1wqf). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis, PDB code: 1wqf:

Cadmium binding site 1 out of 1 in 1wqf

Go back to Cadmium Binding Sites List in 1wqf
Cadmium binding site 1 out of 1 in the Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ribosome Recycling Factor From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd186

b:25.2
occ:1.00
OE2 A:GLU10 2.1 9.5 1.0
OE1 A:GLU14 2.1 8.6 1.0
O A:HOH257 2.2 24.2 1.0
CD A:GLU14 3.2 8.4 1.0
CD A:GLU10 3.3 10.7 1.0
OE2 A:GLU14 3.6 10.5 1.0
OH A:TYR167 3.9 23.4 1.0
CG A:GLU10 3.9 12.6 1.0
OE1 A:GLU10 4.3 8.5 1.0
CG A:GLU14 4.4 7.9 1.0
O A:HOH187 4.5 6.9 1.0

Reference:

K.Saikrishnan, S.K.Kalapala, U.Varshney, M.Vijayan. X-Ray Structural Studies of Mycobacterium Tuberculosis Rrf and A Comparative Study of Rrfs of Known Structure. Molecular Plasticity and Biological Implications J.Mol.Biol. V. 345 29 2005.
ISSN: ISSN 0022-2836
PubMed: 15567408
DOI: 10.1016/J.JMB.2004.10.034
Page generated: Thu Jul 10 11:30:36 2025

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