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Cadmium in PDB 1yj9: Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22
Protein crystallography data
The structure of Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22, PDB code: 1yj9
was solved by
D.Tu,
G.Blaha,
P.B.Moore,
T.A.Steitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 29.94 / 2.90 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 213.076, 300.750, 575.478, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 18.4 / 24.2 |
Other elements in 1yj9:
The structure of Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22 also contains other interesting chemical elements:
| Magnesium | (Mg) | 116 atoms |
| Potassium | (K) | 2 atoms |
| Chlorine | (Cl) | 22 atoms |
| Sodium | (Na) | 86 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22
(pdb code 1yj9). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22, PDB code: 1yj9:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22, PDB code: 1yj9:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 1yj9
Go back to
Cadmium Binding Sites List in 1yj9
Cadmium binding site 1 out
of 5 in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22 within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 1yj9
Go back to
Cadmium Binding Sites List in 1yj9
Cadmium binding site 2 out
of 5 in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22 within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 1yj9
Go back to
Cadmium Binding Sites List in 1yj9
Cadmium binding site 3 out
of 5 in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22 within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 1yj9
Go back to
Cadmium Binding Sites List in 1yj9
Cadmium binding site 4 out
of 5 in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22 within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 1yj9
Go back to
Cadmium Binding Sites List in 1yj9
Cadmium binding site 5 out
of 5 in the Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of Crystal Structure of the Mutant 50S Ribosomal Subunit of Haloarcula Marismortui Containing A Three Residue Deletion in L22 within 5.0Å range:
|
Reference:
D.Tu,
G.Blaha,
P.B.Moore,
T.A.Steitz.
Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide A Structural Explanation For Resistance. Cell(Cambridge,Mass.) V. 121 257 2005.
ISSN: ISSN 0092-8674
PubMed: 15851032
DOI: 10.1016/J.CELL.2005.02.005
Page generated: Thu Jul 10 11:36:06 2025
ISSN: ISSN 0092-8674
PubMed: 15851032
DOI: 10.1016/J.CELL.2005.02.005
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