Cadmium in PDB 2bn0: Banana Lectin Bound to Laminaribiose

The structure of Banana Lectin Bound to Laminaribiose, PDB code: 2bn0 was solved by J.L.Meagher, H.C.Winter, P.Ezell, I.J.Goldstein, J.A.Stuckey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.8
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.800, 81.800, 147.200, 90.00, 90.00, 120.00
R / Rfree (%)	20.5 / 26.2

The binding sites of Cadmium atom in the Banana Lectin Bound to Laminaribiose (pdb code 2bn0). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Banana Lectin Bound to Laminaribiose, PDB code: 2bn0:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Banana Lectin Bound to Laminaribiose


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Banana Lectin Bound to Laminaribiose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1143 b:40.2 occ:1.00 NE2 B:HIS84 2.0 24.8 1.0 OD2 A:ASP41 2.4 28.3 1.0 ND1 A:HIS54 2.5 31.7 1.0 OD1 A:ASP41 2.5 32.3 1.0 CG A:ASP41 2.8 31.2 1.0 CE1 B:HIS84 2.9 29.2 1.0 CD2 B:HIS84 3.1 29.6 1.0 CE1 A:HIS54 3.4 30.9 1.0 CG A:HIS54 3.5 30.7 1.0 O A:HOH2036 3.5 41.0 1.0 CB A:HIS54 3.7 31.1 1.0 O A:HOH2055 4.0 46.6 1.0 ND1 B:HIS84 4.1 29.1 1.0 CG B:HIS84 4.2 31.7 1.0 CB A:ASP41 4.3 30.6 1.0 NE2 A:HIS54 4.5 31.1 1.0 CA A:HIS54 4.5 32.0 1.0 CD2 A:HIS54 4.5 30.5 1.0 CE1 A:PHE32 4.6 49.1 1.0 CE2 B:TYR83 4.7 39.5 1.0 OH B:TYR83 4.8 40.3 1.0 OD2 B:ASP35 4.8 32.3 1.0 CZ A:PHE32 4.8 48.5 1.0

Cadmium binding site 2 out of 2 in the Banana Lectin Bound to Laminaribiose


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Banana Lectin Bound to Laminaribiose within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1144 b:0.2 occ:1.00 ND1 A:HIS84 2.9 69.3 1.0 O A:HOH2065 3.2 48.0 1.0 CE1 A:HIS84 3.4 70.3 1.0 CG A:HIS84 4.1 68.4 1.0 CA A:HIS84 4.3 62.4 1.0 CB A:HIS84 4.6 65.2 1.0 NE2 A:HIS84 4.7 71.2 1.0 N A:HIS84 4.7 59.6 1.0

J.L.Meagher, H.C.Winter, P.Ezell, I.J.Goldstein, J.A.Stuckey. Crystal Structure of Banana Lectin Reveals A Novel Second Sugar Binding Site. Glycobiology V. 15 1033 2005.
ISSN: ISSN 0959-6658
PubMed: 15944373
DOI: 10.1093/GLYCOB/CWI088