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Cadmium in PDB 2cu3: Crystal Structure of TT1568 From Thermus Thermophilus HB8

Protein crystallography data

The structure of Crystal Structure of TT1568 From Thermus Thermophilus HB8, PDB code: 2cu3 was solved by M.Sugahara, S.Satoh, A.Ebihara, S.Kuramitsu, S.Yokoyama, N.Kunishima, Rikenstructural Genomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.42 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 28.915, 72.846, 31.124, 90.00, 113.77, 90.00
R / Rfree (%) 22.4 / 24.1

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of TT1568 From Thermus Thermophilus HB8 (pdb code 2cu3). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of TT1568 From Thermus Thermophilus HB8, PDB code: 2cu3:

Cadmium binding site 1 out of 1 in 2cu3

Go back to Cadmium Binding Sites List in 2cu3
Cadmium binding site 1 out of 1 in the Crystal Structure of TT1568 From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of TT1568 From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1001

b:25.2
occ:1.00
OE2 A:GLU7 2.4 24.0 1.0
OE2 B:GLU7 2.4 22.8 1.0
OE1 B:GLU7 2.6 22.3 1.0
OE1 A:GLU7 2.7 21.3 1.0
CD A:GLU7 2.8 19.7 1.0
CD B:GLU7 2.8 23.9 1.0
O B:HOH77 3.9 35.0 1.0
CG A:GLU7 4.3 18.2 1.0
CG B:GLU7 4.3 22.8 1.0
O B:HOH119 4.4 29.3 1.0
O A:HOH1026 4.5 43.0 1.0
O B:HOH95 4.5 45.8 1.0
O A:HOH1057 4.5 43.7 1.0

Reference:

M.Sugahara, S.Satoh, A.Ebihara, S.Kuramitsu, S.Yokoyama, N.Kunishima. Crystal Structure of TT1568 From Thermus Thermophilus HB8 To Be Published.
Page generated: Thu Jul 10 11:43:33 2025

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