Cadmium in PDB 2p64: D Domain of B-Trcp

The structure of D Domain of B-Trcp, PDB code: 2p64 was solved by D.Neculai, S.Orlicky, D.Ceccarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.78 / 2.50
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.316, 71.316, 116.301, 90.00, 90.00, 90.00
R / Rfree (%)	23.9 / 26.7

The binding sites of Cadmium atom in the D Domain of B-Trcp (pdb code 2p64). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the D Domain of B-Trcp, PDB code: 2p64:

Cadmium binding site 1 out of 1 in the D Domain of B-Trcp


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of D Domain of B-Trcp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd100 b:27.2 occ:0.50 OE2 A:GLU146 2.2 43.7 1.0 OE1 A:GLU146 2.5 46.5 1.0 SG B:CYS161 2.5 51.2 1.0 CD A:GLU146 2.7 47.7 1.0 CB B:CYS161 3.3 53.5 1.0 CG A:GLU146 4.2 46.0 1.0 CA B:CYS161 4.8 53.9 1.0 CD1 B:TYR163 4.8 41.4 1.0 OE1 B:GLN164 4.8 50.9 1.0 CB A:GLU146 4.9 47.2 1.0 CG B:GLN164 4.9 48.9 1.0 CB B:TYR163 4.9 46.6 1.0

X.Tang, S.Orlicky, Z.Lin, A.Willems, D.Neculai, D.Ceccarelli, F.Mercurio, B.H.Shilton, F.Sicheri, M.Tyers. Suprafacial Orientation of the SCFCDC4 Dimer Accommodates Multiple Geometries For Substrate Ubiquitination. Cell(Cambridge,Mass.) V. 129 1165 2007.
ISSN: ISSN 0092-8674
PubMed: 17574027
DOI: 10.1016/J.CELL.2007.04.042