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Cadmium in PDB 3cpw: The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Protein crystallography data
The structure of The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 3cpw
was solved by
J.A.Ippolito,
Z.K.Kanyo,
D.Wang,
F.J.Franceschi,
P.B.Moore,
T.A.Steitz,
E.M.Duffy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.00 / 2.70 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 211.730, 298.580, 575.290, 90.00, 90.00, 90.00 |
| R / Rfree (%) | n/a / n/a |
Other elements in 3cpw:
The structure of The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui also contains other interesting chemical elements:
| Fluorine | (F) | 1 atom |
| Strontium | (Sr) | 108 atoms |
| Magnesium | (Mg) | 92 atoms |
| Potassium | (K) | 2 atoms |
| Chlorine | (Cl) | 22 atoms |
| Sodium | (Na) | 75 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
(pdb code 3cpw). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 3cpw:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui, PDB code: 3cpw:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 3cpw
Go back to
Cadmium Binding Sites List in 3cpw
Cadmium binding site 1 out
of 5 in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 3cpw
Go back to
Cadmium Binding Sites List in 3cpw
Cadmium binding site 2 out
of 5 in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 3cpw
Go back to
Cadmium Binding Sites List in 3cpw
Cadmium binding site 3 out
of 5 in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 3cpw
Go back to
Cadmium Binding Sites List in 3cpw
Cadmium binding site 4 out
of 5 in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 3cpw
Go back to
Cadmium Binding Sites List in 3cpw
Cadmium binding site 5 out
of 5 in the The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of The Structure of the Antibiotic Linezolid Bound to the Large Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
|
Reference:
J.A.Ippolito,
Z.K.Kanyo,
D.Wang,
F.J.Franceschi,
P.B.Moore,
T.A.Steitz,
E.M.Duffy.
Crystal Structure of the Oxazolidinone Antibiotic Linezolid Bound to the 50S Ribosomal Subunit J.Med.Chem. V. 51 3353 2008.
ISSN: ISSN 0022-2623
PubMed: 18494460
DOI: 10.1021/JM800379D
Page generated: Thu Jul 10 12:29:56 2025
ISSN: ISSN 0022-2623
PubMed: 18494460
DOI: 10.1021/JM800379D
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