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Cadmium in PDB 3i55: Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit
Protein crystallography data
The structure of Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit, PDB code: 3i55
was solved by
G.Gurel,
G.Blaha,
T.A.Steitz,
P.B.Moore,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 49.98 / 3.11 |
| Space group | C 2 2 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 211.324, 299.649, 574.241, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 21 / 26 |
Other elements in 3i55:
The structure of Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit also contains other interesting chemical elements:
| Strontium | (Sr) | 108 atoms |
| Magnesium | (Mg) | 93 atoms |
| Potassium | (K) | 2 atoms |
| Chlorine | (Cl) | 22 atoms |
| Sodium | (Na) | 75 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit
(pdb code 3i55). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit, PDB code: 3i55:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit, PDB code: 3i55:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 3i55
Go back to
Cadmium Binding Sites List in 3i55
Cadmium binding site 1 out
of 5 in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 3i55
Go back to
Cadmium Binding Sites List in 3i55
Cadmium binding site 2 out
of 5 in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 3i55
Go back to
Cadmium Binding Sites List in 3i55
Cadmium binding site 3 out
of 5 in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 3i55
Go back to
Cadmium Binding Sites List in 3i55
Cadmium binding site 4 out
of 5 in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 3i55
Go back to
Cadmium Binding Sites List in 3i55
Cadmium binding site 5 out
of 5 in the Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of Co-Crystal Structure of Mycalamide A Bound to the Large Ribosomal Subunit within 5.0Å range:
|
Reference:
G.Gurel,
G.Blaha,
T.A.Steitz,
P.B.Moore.
Structures of Triacetyloleandomycin and Mycalamide A Bind to the Large Ribosomal Subunit of Haloarcula Marismortui. Antimicrob.Agents Chemother. V. 53 5010 2009.
ISSN: ISSN 0066-4804
PubMed: 19738021
DOI: 10.1128/AAC.00817-09
Page generated: Thu Jul 10 12:41:45 2025
ISSN: ISSN 0066-4804
PubMed: 19738021
DOI: 10.1128/AAC.00817-09
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