Cadmium in PDB 4q0y: Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution

The structure of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution, PDB code: 4q0y was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.68 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.224, 96.134, 118.711, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 20.2

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Cadmium atom in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution (pdb code 4q0y). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 17 binding sites of Cadmium where determined in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution, PDB code: 4q0y:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Cadmium binding site 1 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:16.8 occ:0.60 OE2 A:GLU33 2.2 27.4 1.0 O B:HOH398 2.2 10.8 0.6 O A:HOH393 2.2 14.0 1.0 O B:HOH395 2.3 10.8 0.4 O B:HOH396 2.4 26.4 1.0 OE1 A:GLU33 2.5 27.8 1.0 CD A:GLU33 2.7 24.3 1.0 O B:HOH395 2.9 11.8 0.6 O B:HOH398 2.9 11.7 0.4 NZ B:LYS69 3.8 28.8 1.0 CB B:SER66 4.2 19.0 1.0 OG B:SER66 4.2 19.1 1.0 CG A:GLU33 4.2 21.7 1.0 O A:HOH394 4.3 28.7 1.0 O A:ASN73 4.4 15.8 1.0 OE2 B:GLU62 4.4 38.7 1.0 CE B:LYS69 4.4 28.3 1.0 CD B:LYS69 4.5 23.1 1.0 CA B:SER66 4.5 15.4 1.0 O A:HOH340 4.5 29.1 1.0 O B:HOH397 4.6 38.6 1.0 CA A:GLY0 4.8 63.8 1.0 O B:SER35 4.8 19.0 1.0 O B:HOH399 4.8 36.0 1.0

Cadmium binding site 2 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:21.5 occ:0.70 OE2 A:GLU62 2.3 20.2 1.0 O A:HOH397 2.3 30.6 1.0 O A:HOH396 2.4 7.9 1.0 O B:HOH402 2.5 20.4 0.5 O A:HOH403 2.5 43.6 1.0 OE1 A:GLU62 2.5 20.9 1.0 CD A:GLU62 2.8 21.6 1.0 O B:HOH404 3.3 39.1 1.0 O B:HOH402 4.0 19.2 0.5 CG A:GLU62 4.3 20.7 1.0 CB A:SER36 4.5 16.1 1.0 CB A:SER66 4.6 19.1 0.5 O A:LEU37 4.6 15.7 1.0 CB A:SER66 4.7 22.1 0.5 CA A:SER36 4.7 16.5 1.0 N A:LEU37 4.8 14.9 1.0 O B:HOH403 4.8 51.5 1.0 CA A:SER66 4.9 19.0 0.5 CA A:SER66 4.9 20.4 0.5 N A:SER66 5.0 17.3 1.0

Cadmium binding site 3 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:30.4 occ:0.50 O A:HOH412 2.0 27.3 1.0 O A:HOH398 2.5 27.3 1.0 OD2 A:ASP115 2.6 27.1 1.0 OD1 A:ASP115 2.8 25.8 1.0 O A:HOH411 2.9 37.6 1.0 CG A:ASP115 3.1 23.2 1.0 O A:HOH369 3.2 37.7 1.0 CB A:ASP115 4.5 20.8 1.0 CE A:LYS106 4.6 21.5 1.0 O A:HOH399 4.8 18.2 0.5

Cadmium binding site 4 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:34.2 occ:0.50 OE2 A:GLU109 2.2 42.6 1.0 O A:HOH401 2.5 52.4 1.0 O A:HOH335 2.5 30.6 1.0 OD2 A:ASP110 2.6 39.2 1.0 CD A:GLU109 3.2 32.8 1.0 CG A:GLU109 3.5 29.4 1.0 O A:HOH301 3.5 16.8 1.0 CG A:ASP110 3.6 41.7 1.0 O A:HOH358 4.1 31.1 1.0 OD1 A:ASP110 4.1 48.1 1.0 O A:HOH402 4.1 17.1 0.5 OE1 A:GLU109 4.3 34.7 1.0 O A:HOH402 4.3 27.6 0.5 CB A:ASP110 4.9 38.3 1.0 CB A:GLU109 5.0 25.7 1.0

Cadmium binding site 5 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd205 b:29.1 occ:0.50 O A:HOH407 2.1 43.2 1.0 O A:HOH406 2.2 33.8 1.0 OE1 A:GLU63 2.6 41.2 1.0 O A:HOH330 2.7 17.9 1.0 OE2 A:GLU63 3.2 68.2 1.0 CD A:GLU63 3.2 56.5 1.0 OD1 A:ASP61 3.4 33.4 0.4 CG A:ASP61 4.2 27.0 0.4 N A:GLU62 4.4 19.4 1.0 CB A:GLU62 4.6 21.4 1.0 OD2 A:ASP61 4.6 31.4 0.4 CG A:GLU63 4.7 46.7 1.0 N A:GLU63 4.8 24.5 1.0 CA A:GLU62 5.0 18.9 1.0

Cadmium binding site 6 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd206 b:15.0 occ:0.60 OD2 A:ASP89 2.2 35.6 1.0 O A:HOH312 2.3 22.6 1.0 CG A:ASP89 2.9 30.6 1.0 OD1 A:ASP89 2.9 30.4 1.0 O A:HOH347 4.2 35.6 1.0 CB A:ASP89 4.4 31.8 1.0

Cadmium binding site 7 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd201 b:22.6 occ:0.80 OD1 B:ASP89 2.4 26.2 1.0 O B:HOH336 2.4 22.0 1.0 O B:HOH301 2.4 7.7 1.0 OD2 B:ASP89 2.8 31.2 1.0 CG B:ASP89 3.0 28.6 1.0 CB B:ASP89 4.5 23.6 1.0

Cadmium binding site 8 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd202 b:32.5 occ:0.50 O C:HOH384 1.9 28.0 1.0 O B:HOH423 2.3 39.0 1.0 O C:HOH385 2.3 25.6 1.0 O C:HOH316 2.6 18.0 1.0 O C:HOH401 2.6 48.8 1.0 O B:HOH344 2.9 41.2 1.0 O C:HOH383 3.5 33.8 1.0 O B:ASP126 4.0 19.2 1.0 OD1 C:ASP54 4.0 34.6 1.0 CD C:CD201 4.1 23.6 0.7 O C:HOH348 4.2 24.3 1.0 O B:GLY125 4.2 19.7 1.0 NZ B:LYS153 4.3 26.2 1.0 C B:GLY125 4.7 19.6 1.0 C B:ASP126 4.9 19.9 1.0 CB C:ASN53 4.9 31.9 1.0 CG C:ASP54 5.0 31.0 1.0

Cadmium binding site 9 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd203 b:27.6 occ:0.50 OE1 B:GLU62 2.2 31.3 1.0 O A:HOH394 2.2 28.7 1.0 O B:HOH399 2.3 36.0 1.0 O A:HOH395 2.5 33.5 1.0 OE2 B:GLU62 2.5 38.7 1.0 CD B:GLU62 2.7 31.5 1.0 O A:GLY0 3.9 53.1 1.0 N A:GLY0 3.9 72.3 1.0 CA A:GLY0 4.0 63.8 1.0 O B:LEU37 4.1 20.4 1.0 O B:HOH347 4.1 30.9 1.0 C A:GLY0 4.1 54.6 1.0 CG B:GLU62 4.2 23.2 1.0 O B:HOH396 4.7 26.4 1.0 OE2 A:GLU33 4.7 27.4 1.0 O B:HOH395 4.8 10.8 0.4 O B:HOH395 4.8 11.8 0.6 CB B:GLU62 5.0 18.9 1.0

Cadmium binding site 10 out of 17 in the Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 10 of Crystal Structure of A Hypothetical Protein (CLOSPO_01618) From Clostridium Sporogenes Atcc 15579 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd204 b:22.7 occ:0.80 O B:HOH408 2.1 45.9 1.0 OE1 B:GLU109 2.3 31.0 1.0 O B:HOH359 2.5 25.4 1.0 OE2 B:GLU109 2.7 42.9 1.0 CD B:GLU109 2.8 32.5 1.0 SE B:MSE32 3.5 65.2 0.8 CG B:MSE32 4.3 56.7 1.0 CG B:GLU109 4.3 29.0 1.0 OH B:TYR107 4.8 18.0 1.0 CE2 B:TYR107 4.9 16.6 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.