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Cadmium in PDB 5cvp: Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
Enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
All present enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571:
3.5.1.88;
3.5.1.88;
Protein crystallography data
The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571, PDB code: 5cvp
was solved by
H.P.T.Ngo,
L.W.Kang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.40 / 2.00 |
| Space group | P 61 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 58.871, 58.871, 264.106, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 17.4 / 21.6 |
Other elements in 5cvp:
The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 also contains other interesting chemical elements:
| Chlorine | (Cl) | 1 atom |
| Sodium | (Na) | 2 atoms |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
(pdb code 5cvp). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 5 binding sites of Cadmium where determined in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571, PDB code: 5cvp:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
In total 5 binding sites of Cadmium where determined in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571, PDB code: 5cvp:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5;
Cadmium binding site 1 out of 5 in 5cvp
Go back to
Cadmium Binding Sites List in 5cvp
Cadmium binding site 1 out
of 5 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 within 5.0Å range:
|
Cadmium binding site 2 out of 5 in 5cvp
Go back to
Cadmium Binding Sites List in 5cvp
Cadmium binding site 2 out
of 5 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 within 5.0Å range:
|
Cadmium binding site 3 out of 5 in 5cvp
Go back to
Cadmium Binding Sites List in 5cvp
Cadmium binding site 3 out
of 5 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 within 5.0Å range:
|
Cadmium binding site 4 out of 5 in 5cvp
Go back to
Cadmium Binding Sites List in 5cvp
Cadmium binding site 4 out
of 5 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 within 5.0Å range:
|
Cadmium binding site 5 out of 5 in 5cvp
Go back to
Cadmium Binding Sites List in 5cvp
Cadmium binding site 5 out
of 5 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 5 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 within 5.0Å range:
|
Reference:
H.P.T.Ngo,
L.W.Kang.
Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryze, in Complex with Fragment 571 To Be Published.
Page generated: Thu Jul 10 14:14:42 2025
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