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Cadmium in PDB 5cxj: Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
Enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
All present enzymatic activity of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124:
3.5.1.88;
3.5.1.88;
Protein crystallography data
The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124, PDB code: 5cxj
was solved by
H.P.T.Ngo,
L.W.Kang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.40 / 2.38 |
| Space group | P 61 2 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 58.702, 58.702, 265.366, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 18.1 / 22.6 |
Other elements in 5cxj:
The structure of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124 also contains other interesting chemical elements:
| Sodium | (Na) | 1 atom |
Cadmium Binding Sites:
The binding sites of Cadmium atom in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
(pdb code 5cxj). This binding sites where shown within
5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124, PDB code: 5cxj:
Jump to Cadmium binding site number: 1; 2; 3; 4;
In total 4 binding sites of Cadmium where determined in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124, PDB code: 5cxj:
Jump to Cadmium binding site number: 1; 2; 3; 4;
Cadmium binding site 1 out of 4 in 5cxj
Go back to
Cadmium Binding Sites List in 5cxj
Cadmium binding site 1 out
of 4 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 1 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124 within 5.0Å range:
|
Cadmium binding site 2 out of 4 in 5cxj
Go back to
Cadmium Binding Sites List in 5cxj
Cadmium binding site 2 out
of 4 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 2 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124 within 5.0Å range:
|
Cadmium binding site 3 out of 4 in 5cxj
Go back to
Cadmium Binding Sites List in 5cxj
Cadmium binding site 3 out
of 4 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 3 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124 within 5.0Å range:
|
Cadmium binding site 4 out of 4 in 5cxj
Go back to
Cadmium Binding Sites List in 5cxj
Cadmium binding site 4 out
of 4 in the Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Cadmium with other atoms in the Cd binding
site number 4 of Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124 within 5.0Å range:
|
Reference:
H.P.T.Ngo,
L.W.Kang.
Structure of XOO1075, A Peptide Deformylase From Xanthomonas Oryzae Pv Oryzae, in Complex with Fragment 124 To Be Published.
Page generated: Thu Jul 10 14:16:02 2025
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