Cadmium in PDB 5e2d: Crystal Structure of Ircp*/Pd(Allyl)-Apo-Fr

The structure of Crystal Structure of Ircp*/Pd(Allyl)-Apo-Fr, PDB code: 5e2d was solved by B.Maity, K.Fukumori, S.Abe, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.03 / 1.87
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	181.190, 181.190, 181.190, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 20.1

The structure of Crystal Structure of Ircp*/Pd(Allyl)-Apo-Fr also contains other interesting chemical elements:

Palladium	(Pd)	3 atoms
Iridium	(Ir)	6 atoms

The binding sites of Cadmium atom in the Crystal Structure of Ircp*/Pd(Allyl)-Apo-Fr (pdb code 5e2d). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of Ircp*/Pd(Allyl)-Apo-Fr, PDB code: 5e2d:

Cadmium binding site 1 out of 1 in the Crystal Structure of Ircp*/Pd(Allyl)-Apo-Fr


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Ircp*/Pd(Allyl)-Apo-Fr within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd212 b:37.4 occ:0.50 OD2 A:ASP80 1.4 5.8 1.0 CG A:ASP80 2.5 29.1 1.0 OD1 A:ASP80 2.6 21.4 1.0 CB A:ASP80 4.1 23.4 1.0 O A:HOH358 4.5 29.4 1.0

B.Maity, K.Fukumori, S.Abe, T.Ueno. Immobilization of Two Organometallic Complexes Into A Single Cage to Construct Protein-Based Microcompartments Chem.Commun.(Camb.) V. 52 5463 2016.
ISSN: ESSN 1364-548X
PubMed: 27021005
DOI: 10.1039/C6CC00679E