Cadmium in PDB 5ml1: uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains

The binding sites of Cadmium atom in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains (pdb code 5ml1). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 9 binding sites of Cadmium where determined in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains, PDB code: 5ml1:
Jump to Cadmium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Cadmium binding site 1 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:0.0 occ:1.00 SG A:CYS76 2.6 0.0 1.0 SG A:CYS93 2.6 0.0 1.0 SG A:CYS74 2.6 0.0 1.0 SG A:CYS101 2.7 0.0 1.0 HB3 A:CYS74 2.8 0.0 1.0 HB2 A:CYS101 3.1 0.0 1.0 CB A:CYS74 3.1 0.0 1.0 HB2 A:CYS74 3.1 0.0 1.0 CB A:CYS101 3.5 0.0 1.0 CD A:CD202 3.8 0.0 1.0 HB2 A:CYS76 3.9 0.0 1.0 CB A:CYS76 4.0 0.0 1.0 HB2 A:LYS102 4.0 0.0 1.0 HB3 A:CYS101 4.0 0.0 1.0 SG A:CYS81 4.1 0.0 1.0 CB A:CYS93 4.2 0.0 1.0 HB2 A:CYS95 4.3 0.0 1.0 HB3 A:LYS102 4.3 0.0 1.0 H A:CYS76 4.4 0.0 1.0 HB3 A:CYS93 4.4 0.0 1.0 HB2 A:CYS93 4.5 0.0 1.0 HB3 A:CYS76 4.5 0.0 1.0 CA A:CYS74 4.6 0.0 1.0 H A:LYS102 4.6 0.0 1.0 CB A:LYS102 4.7 0.0 1.0 CD A:CD203 4.7 0.0 1.0 N A:LYS102 4.7 0.0 1.0 CA A:CYS101 4.7 0.0 1.0 C A:CYS101 4.8 0.0 1.0 HB2 A:CYS87 4.8 0.0 1.0 H A:GLY89 4.8 0.0 1.0 HA A:CYS74 4.9 0.0 1.0 HA A:CYS81 5.0 0.0 1.0 SG A:CYS95 5.0 0.0 1.0 HZ3 A:LYS102 5.0 0.0 1.0

Cadmium binding site 2 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:0.0 occ:1.00 SG A:CYS93 2.5 0.0 1.0 SG A:CYS87 2.6 0.0 1.0 HB2 A:CYS87 2.6 0.0 1.0 SG A:CYS95 2.8 0.0 1.0 SG A:CYS81 2.9 0.0 1.0 HA A:CYS93 2.9 0.0 1.0 CB A:CYS87 3.2 0.0 1.0 HB2 A:LYS85 3.2 0.0 1.0 H A:CYS87 3.4 0.0 1.0 H A:LYS94 3.4 0.0 1.0 CB A:CYS93 3.7 0.0 1.0 CD A:CD203 3.8 0.0 1.0 CD A:CD201 3.8 0.0 1.0 CA A:CYS93 3.8 0.0 1.0 HG3 A:LYS85 3.8 0.0 1.0 HB3 A:CYS87 3.8 0.0 1.0 CB A:LYS85 4.0 0.0 1.0 HB3 A:LYS85 4.0 0.0 1.0 H A:CYS95 4.1 0.0 1.0 HB2 A:CYS95 4.1 0.0 1.0 N A:CYS87 4.2 0.0 1.0 CB A:CYS95 4.2 0.0 1.0 SG A:CYS101 4.2 0.0 1.0 SG A:CYS83 4.2 0.0 1.0 HB3 A:CYS93 4.3 0.0 1.0 CA A:CYS87 4.3 0.0 1.0 N A:LYS94 4.3 0.0 1.0 H A:THR88 4.3 0.0 1.0 CG A:LYS85 4.4 0.0 1.0 H A:GLY86 4.4 0.0 1.0 CB A:CYS81 4.5 0.0 1.0 HB2 A:CYS93 4.5 0.0 1.0 C A:CYS93 4.6 0.0 1.0 HB2 A:CYS81 4.7 0.0 1.0 N A:CYS95 4.7 0.0 1.0 HB3 A:CYS101 4.7 0.0 1.0 N A:CYS93 4.8 0.0 1.0 HG2 A:LYS85 4.8 0.0 1.0 HB3 A:CYS81 4.8 0.0 1.0 SG A:CYS76 4.8 0.0 1.0 HB3 A:CYS95 4.9 0.0 1.0 N A:THR88 5.0 0.0 1.0

Cadmium binding site 3 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd203 b:0.0 occ:1.00 SG A:CYS95 2.5 0.0 1.0 SG A:CYS83 2.6 0.0 1.0 SG A:CYS101 2.7 0.0 1.0 HB3 A:CYS95 2.7 0.0 1.0 SG A:CYS99 2.8 0.0 1.0 HB3 A:CYS83 2.8 0.0 1.0 CB A:CYS95 3.0 0.0 1.0 CB A:CYS83 3.1 0.0 1.0 H A:CYS101 3.1 0.0 1.0 HB2 A:CYS95 3.2 0.0 1.0 HB2 A:CYS83 3.3 0.0 1.0 HB3 A:CYS99 3.3 0.0 1.0 HB3 A:CYS101 3.4 0.0 1.0 CB A:CYS99 3.6 0.0 1.0 CB A:CYS101 3.7 0.0 1.0 CD A:CD202 3.8 0.0 1.0 HG3 A:LYS85 3.9 0.0 1.0 H A:SER100 3.9 0.0 1.0 N A:CYS101 4.0 0.0 1.0 HG2 A:LYS85 4.0 0.0 1.0 HB2 A:CYS99 4.1 0.0 1.0 SG A:CYS81 4.2 0.0 1.0 HB2 A:LYS85 4.4 0.0 1.0 CG A:LYS85 4.4 0.0 1.0 H A:LYS102 4.4 0.0 1.0 HB3 A:SER100 4.4 0.0 1.0 CA A:CYS95 4.5 0.0 1.0 H A:CYS83 4.5 0.0 1.0 CA A:CYS101 4.5 0.0 1.0 HB2 A:CYS101 4.5 0.0 1.0 N A:SER100 4.5 0.0 1.0 CA A:CYS83 4.6 0.0 1.0 CD A:CD201 4.7 0.0 1.0 HA A:CYS95 4.8 0.0 1.0 H A:ASP96 4.8 0.0 1.0 H A:LYS85 4.9 0.0 1.0 N A:CYS83 5.0 0.0 1.0 CA A:CYS99 5.0 0.0 1.0 CB A:LYS85 5.0 0.0 1.0

Cadmium binding site 4 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd204 b:0.0 occ:1.00 SG A:CYS53 2.6 0.0 1.0 SG A:CYS48 2.6 0.0 1.0 SG A:CYS67 2.8 0.0 1.0 SG A:CYS70 2.8 0.0 1.0 HB3 A:CYS67 2.8 0.0 1.0 CB A:CYS67 3.2 0.0 1.0 HB2 A:SER69 3.3 0.0 1.0 HB3 A:CYS70 3.3 0.0 1.0 H A:CYS70 3.4 0.0 1.0 HB2 A:CYS67 3.5 0.0 1.0 HA A:CYS48 3.5 0.0 1.0 HB2 A:CYS48 3.6 0.0 1.0 CB A:CYS70 3.6 0.0 1.0 CB A:CYS48 3.6 0.0 1.0 HB2 A:CYS55 3.7 0.0 1.0 HB2 A:CYS53 3.7 0.0 1.0 CB A:CYS53 3.9 0.0 1.0 N A:CYS70 4.0 0.0 1.0 CA A:CYS48 4.1 0.0 1.0 CD A:CD205 4.1 0.0 1.0 H A:SER69 4.2 0.0 1.0 CD A:CD206 4.2 0.0 1.0 CB A:SER69 4.3 0.0 1.0 HG A:SER69 4.4 0.0 1.0 CA A:CYS70 4.4 0.0 1.0 SG A:CYS65 4.4 0.0 1.0 HB3 A:CYS53 4.5 0.0 1.0 O A:CYS48 4.5 0.0 1.0 HB2 A:CYS70 4.5 0.0 1.0 SG A:CYS55 4.6 0.0 1.0 HB3 A:CYS48 4.6 0.0 1.0 CB A:CYS55 4.6 0.0 1.0 CA A:CYS67 4.7 0.0 1.0 C A:CYS48 4.7 0.0 1.0 H A:SER71 4.7 0.0 1.0 H A:GLY56 4.8 0.0 1.0 C A:SER69 4.8 0.0 1.0 H A:CYS55 4.8 0.0 1.0 HA A:CYS53 4.8 0.0 1.0 N A:SER69 4.9 0.0 1.0 HB3 A:SER69 4.9 0.0 1.0 CA A:SER69 4.9 0.0 1.0 OG A:SER69 4.9 0.0 1.0 CA A:CYS53 5.0 0.0 1.0

Cadmium binding site 5 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 5 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd205 b:0.0 occ:1.00 SG A:CYS65 2.6 0.0 1.0 SG A:CYS48 2.6 0.0 1.0 SG A:CYS61 2.7 0.0 1.0 SG A:CYS44 2.8 0.0 1.0 HA A:CYS44 2.8 0.0 1.0 HB2 A:CYS48 3.0 0.0 1.0 HB3 A:CYS48 3.1 0.0 1.0 CB A:CYS48 3.1 0.0 1.0 HB2 A:CYS65 3.2 0.0 1.0 CB A:CYS65 3.5 0.0 1.0 CB A:CYS44 3.5 0.0 1.0 HB3 A:CYS44 3.5 0.0 1.0 H A:THR45 3.6 0.0 1.0 CA A:CYS44 3.6 0.0 1.0 HA A:CYS65 3.9 0.0 1.0 HB3 A:CYS67 3.9 0.0 1.0 CD A:CD204 4.1 0.0 1.0 CD A:CD206 4.2 0.0 1.0 O A:GLY43 4.2 0.0 1.0 CB A:CYS61 4.2 0.0 1.0 HB3 A:CYS61 4.2 0.0 1.0 HG23 A:THR45 4.2 0.0 1.0 HB2 A:CYS67 4.3 0.0 1.0 CA A:CYS65 4.3 0.0 1.0 HB3 A:CYS65 4.3 0.0 1.0 SG A:CYS70 4.4 0.0 1.0 N A:THR45 4.4 0.0 1.0 H A:ARG66 4.5 0.0 1.0 HB2 A:CYS44 4.5 0.0 1.0 C A:CYS44 4.5 0.0 1.0 H A:CYS67 4.6 0.0 1.0 HB2 A:CYS61 4.6 0.0 1.0 CB A:CYS67 4.6 0.0 1.0 CA A:CYS48 4.6 0.0 1.0 N A:CYS44 4.6 0.0 1.0 HZ3 A:LYS39 4.7 0.0 1.0 C A:GLY43 4.8 0.0 1.0

Cadmium binding site 6 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 6 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd206 b:0.0 occ:1.00 SG A:CYS59 2.6 0.0 1.0 SG A:CYS70 2.6 0.0 1.0 SG A:CYS55 2.6 0.0 1.0 SG A:CYS61 2.7 0.0 1.0 HB2 A:CYS61 2.8 0.0 1.0 HB2 A:CYS70 3.1 0.0 1.0 HB2 A:CYS48 3.2 0.0 1.0 HB3 A:CYS55 3.2 0.0 1.0 H A:CYS61 3.2 0.0 1.0 H A:ASN60 3.2 0.0 1.0 HB2 A:CYS59 3.3 0.0 1.0 CB A:CYS61 3.3 0.0 1.0 CB A:CYS70 3.4 0.0 1.0 CB A:CYS55 3.4 0.0 1.0 HG23 A:THR45 3.4 0.0 1.0 CB A:CYS59 3.5 0.0 1.0 HB2 A:CYS55 3.5 0.0 1.0 HA A:CYS59 3.6 0.0 1.0 HB3 A:CYS70 3.6 0.0 1.0 N A:CYS61 3.8 0.0 1.0 HG21 A:THR45 3.9 0.0 1.0 CA A:CYS59 4.1 0.0 1.0 N A:ASN60 4.1 0.0 1.0 CG2 A:THR45 4.1 0.0 1.0 CA A:CYS61 4.1 0.0 1.0 CD A:CD205 4.2 0.0 1.0 HB3 A:CYS61 4.2 0.0 1.0 CB A:CYS48 4.2 0.0 1.0 CD A:CD204 4.2 0.0 1.0 HB3 A:CYS59 4.4 0.0 1.0 HA A:CYS61 4.5 0.0 1.0 C A:CYS59 4.6 0.0 1.0 HG22 A:THR45 4.6 0.0 1.0 HH11 A:ARG97 4.7 0.0 1.0 SG A:CYS48 4.7 0.0 1.0 HA A:CYS48 4.7 0.0 1.0 C A:ASN60 4.8 0.0 1.0 CA A:CYS70 4.8 0.0 1.0 SG A:CYS65 4.8 0.0 1.0 HB3 A:CYS48 4.8 0.0 1.0 CA A:CYS55 4.8 0.0 1.0 HB A:THR47 5.0 0.0 1.0 CA A:CYS48 5.0 0.0 1.0

Cadmium binding site 7 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 7 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd207 b:0.0 occ:1.00 HB3 A:CYS11 2.3 0.0 1.0 SG A:CYS29 2.6 0.0 1.0 SG A:CYS11 2.6 0.0 1.0 SG A:CYS15 2.7 0.0 1.0 SG A:CYS33 2.7 0.0 1.0 CB A:CYS11 2.9 0.0 1.0 HB3 A:CYS29 3.0 0.0 1.0 HB2 A:CYS15 3.3 0.0 1.0 CB A:CYS29 3.3 0.0 1.0 HA A:CYS11 3.4 0.0 1.0 CB A:CYS15 3.4 0.0 1.0 HB3 A:CYS15 3.6 0.0 1.0 HB2 A:CYS33 3.7 0.0 1.0 HB2 A:CYS29 3.7 0.0 1.0 CA A:CYS11 3.7 0.0 1.0 HB2 A:CYS11 3.8 0.0 1.0 CB A:CYS33 3.9 0.0 1.0 H A:GLY8 3.9 0.0 1.0 HA A:PHE7 4.0 0.0 1.0 HB2 A:CYS35 4.0 0.0 1.0 CD A:CD208 4.0 0.0 1.0 HZ2 A:LYS16 4.0 0.0 1.0 H A:THR12 4.1 0.0 1.0 CD A:CD209 4.1 0.0 1.0 HA A:CYS33 4.3 0.0 1.0 SG A:CYS38 4.4 0.0 1.0 HB3 A:CYS35 4.6 0.0 1.0 HE3 A:LYS16 4.6 0.0 1.0 HB3 A:CYS33 4.7 0.0 1.0 CA A:CYS29 4.7 0.0 1.0 H A:THR30 4.7 0.0 1.0 HB2 A:PHE7 4.7 0.0 1.0 N A:CYS11 4.7 0.0 1.0 HA A:CYS29 4.7 0.0 1.0 N A:THR12 4.7 0.0 1.0 C A:CYS11 4.7 0.0 1.0 CA A:CYS33 4.7 0.0 1.0 CB A:CYS35 4.8 0.0 1.0 N A:GLY8 4.8 0.0 1.0 HE2 A:LYS16 4.9 0.0 1.0 CA A:PHE7 4.9 0.0 1.0 CA A:CYS15 4.9 0.0 1.0 NZ A:LYS16 4.9 0.0 1.0

Cadmium binding site 8 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 8 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd208 b:0.0 occ:1.00 SG A:CYS29 2.7 0.0 1.0 SG A:CYS27 2.7 0.0 1.0 SG A:CYS22 2.8 0.0 1.0 SG A:CYS38 2.9 0.0 1.0 HB2 A:CYS38 2.9 0.0 1.0 HB2 A:CYS29 3.2 0.0 1.0 HB3 A:CYS22 3.3 0.0 1.0 HB2 A:CYS15 3.3 0.0 1.0 HA A:CYS27 3.4 0.0 1.0 H A:ASN28 3.4 0.0 1.0 CB A:CYS38 3.4 0.0 1.0 CB A:CYS22 3.5 0.0 1.0 H A:CYS29 3.5 0.0 1.0 HB2 A:CYS27 3.5 0.0 1.0 HB2 A:CYS22 3.6 0.0 1.0 CB A:CYS29 3.6 0.0 1.0 CB A:CYS27 3.6 0.0 1.0 HB3 A:CYS38 3.8 0.0 1.0 CA A:CYS27 4.0 0.0 1.0 CD A:CD207 4.0 0.0 1.0 HG1 A:THR12 4.1 0.0 1.0 N A:CYS29 4.1 0.0 1.0 N A:ASN28 4.2 0.0 1.0 CB A:CYS15 4.3 0.0 1.0 CD A:CD209 4.3 0.0 1.0 HB3 A:CYS29 4.4 0.0 1.0 CA A:CYS29 4.5 0.0 1.0 SG A:CYS15 4.6 0.0 1.0 C A:CYS27 4.6 0.0 1.0 HB3 A:CYS27 4.6 0.0 1.0 SG A:CYS33 4.6 0.0 1.0 HA A:CYS15 4.8 0.0 1.0 CA A:CYS38 4.8 0.0 1.0 H A:THR12 4.9 0.0 1.0 OG1 A:THR12 4.9 0.0 1.0 CA A:CYS22 4.9 0.0 1.0 HB3 A:CYS15 4.9 0.0 1.0 C A:CYS38 5.0 0.0 1.0

Cadmium binding site 9 out of 9 in the uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 9 of uc(Nmr) Structure of the Littorina Littorea Metallothionein, A Snail Mt Folding Into Three Distinct Domains within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd209 b:0.0 occ:1.00 SG A:CYS15 2.6 0.0 1.0 SG A:CYS20 2.6 0.0 1.0 HB3 A:CYS38 2.7 0.0 1.0 SG A:CYS35 2.8 0.0 1.0 SG A:CYS38 2.8 0.0 1.0 HB3 A:CYS35 2.9 0.0 1.0 CB A:CYS35 3.2 0.0 1.0 CB A:CYS38 3.3 0.0 1.0 HB2 A:CYS35 3.4 0.0 1.0 HA A:CYS15 3.4 0.0 1.0 CB A:CYS15 3.7 0.0 1.0 H A:CYS38 3.7 0.0 1.0 HB2 A:CYS15 3.7 0.0 1.0 CA A:CYS15 4.0 0.0 1.0 HB2 A:CYS38 4.0 0.0 1.0 O A:CYS15 4.0 0.0 1.0 CB A:CYS20 4.1 0.0 1.0 HB2 A:CYS20 4.1 0.0 1.0 CD A:CD207 4.1 0.0 1.0 HB2 A:CYS22 4.2 0.0 1.0 N A:CYS38 4.3 0.0 1.0 HB2 A:SER37 4.3 0.0 1.0 CD A:CD208 4.3 0.0 1.0 CA A:CYS38 4.4 0.0 1.0 C A:CYS15 4.4 0.0 1.0 HB3 A:CYS20 4.5 0.0 1.0 SG A:CYS33 4.5 0.0 1.0 HB3 A:CYS15 4.6 0.0 1.0 CA A:CYS35 4.7 0.0 1.0 SG A:CYS22 4.8 0.0 1.0 HA A:CYS38 4.9 0.0 1.0 H A:SER37 5.0 0.0 1.0 O A:CYS35 5.0 0.0 1.0

C.Baumann, A.Beil, S.Jurt, M.Niederwanger, O.Palacios, M.Capdevila, S.Atrian, R.Dallinger, O.Zerbe. Structural Adaptation of A Protein to Increased Metal Stress: uc(Nmr) Structure of A Marine Snail Metallothionein with An Additional Domain. Angew. Chem. Int. Ed. Engl. V. 56 4617 2017.
ISSN: ESSN 1521-3773
PubMed: 28332759
DOI: 10.1002/ANIE.201611873