Cadmium in PDB 6dc5: Rsv Prefusion F in Complex with AM22 Fab

The structure of Rsv Prefusion F in Complex with AM22 Fab, PDB code: 6dc5 was solved by H.G.Jones, J.S.Mclellan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.23 / 3.50
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	132.450, 152.180, 202.930, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 28

The binding sites of Cadmium atom in the Rsv Prefusion F in Complex with AM22 Fab (pdb code 6dc5). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Rsv Prefusion F in Complex with AM22 Fab, PDB code: 6dc5:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the Rsv Prefusion F in Complex with AM22 Fab


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Rsv Prefusion F in Complex with AM22 Fab within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd602 b:0.3 occ:1.00 ND2 A:ASN165 2.9 0.1 1.0 OE2 A:GLU294 3.0 0.1 1.0 CG A:ASN165 3.7 0.9 1.0 OD1 A:ASN165 3.8 0.4 1.0 N A:GLY162 4.0 97.6 1.0 CD A:GLU294 4.2 0.4 1.0 CA A:GLY162 4.5 98.0 1.0 C A:GLU161 4.9 91.0 1.0 CB A:ASN165 4.9 0.5 1.0 CE A:LYS293 5.0 60.5 1.0 CG A:GLU294 5.0 0.5 1.0

Cadmium binding site 2 out of 3 in the Rsv Prefusion F in Complex with AM22 Fab


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Rsv Prefusion F in Complex with AM22 Fab within 5.0Å range: probe atom residue distance (Å) B Occ D:Cd602 b:0.3 occ:1.00 OD1 D:ASN165 2.8 82.8 1.0 O D:GLU161 2.8 0.6 1.0 C D:GLU161 3.9 0.3 1.0 CG D:ASN165 4.0 83.2 1.0 ND2 D:ASN165 4.6 82.9 1.0 CA D:GLY162 4.6 0.2 1.0 N D:GLY162 4.7 0.2 1.0 CA D:GLU161 4.9 0.3 1.0 OE1 D:GLU294 5.0 0.4 1.0

Cadmium binding site 3 out of 3 in the Rsv Prefusion F in Complex with AM22 Fab


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Rsv Prefusion F in Complex with AM22 Fab within 5.0Å range: probe atom residue distance (Å) B Occ G:Cd602 b:76.5 occ:1.00 OE2 G:GLU294 2.8 98.5 1.0 OD1 G:ASN165 2.8 72.8 1.0 N G:GLY162 3.7 0.5 1.0 CG G:ASN165 3.7 72.5 1.0 ND2 G:ASN165 3.9 72.2 1.0 CD G:GLU294 4.0 96.6 1.0 CA G:GLY162 4.1 0.9 1.0 C G:GLU161 4.7 74.0 1.0 OE1 G:GLU294 4.8 96.5 1.0 CA G:GLU161 4.9 72.8 1.0 CE G:LYS293 4.9 52.8 1.0 CG G:GLU294 4.9 94.1 1.0 NZ G:LYS293 4.9 55.0 1.0 C G:GLY162 5.0 0.7 1.0

H.G.Jones, M.B.Battles, C.Lin, J.S.Mclellan. Rsv Prefusion F in Complex with AM22 Fab To Be Published.