Cadmium in PDB 6jyw: Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna

The structure of Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna, PDB code: 6jyw was solved by X.C.Liu, H.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.95
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	126.435, 126.435, 93.783, 90.00, 90.00, 120.00
R / Rfree (%)	20.2 / 25.3

The binding sites of Cadmium atom in the Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna (pdb code 6jyw). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna, PDB code: 6jyw:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in the Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd201 b:0.5 occ:1.00 OE1 A:GLU62 2.2 94.8 1.0 NE2 A:HIS140 2.3 0.3 1.0 OE2 A:GLU62 2.4 0.6 1.0 ND1 A:HIS87 2.4 92.2 1.0 ND1 A:HIS90 2.5 0.4 1.0 CD A:GLU62 2.6 92.1 1.0 CE1 A:HIS140 3.2 0.9 1.0 CE1 A:HIS87 3.2 89.8 1.0 CD2 A:HIS140 3.2 0.0 1.0 CE1 A:HIS90 3.4 0.1 1.0 CG A:HIS87 3.5 90.5 1.0 CG A:HIS90 3.6 0.2 1.0 CB A:HIS87 3.9 90.7 1.0 CB A:HIS90 3.9 98.3 1.0 CA A:HIS87 4.0 87.8 1.0 CG A:GLU62 4.1 86.3 1.0 ND1 A:HIS140 4.3 0.5 1.0 CG A:HIS140 4.4 0.1 1.0 NE2 A:HIS87 4.4 83.8 1.0 NE2 A:HIS90 4.5 0.0 1.0 CD2 A:HIS87 4.6 84.9 1.0 CD2 A:HIS90 4.6 1.0 1.0 O A:ASP57 4.8 80.9 1.0 N A:HIS87 4.8 93.3 1.0 N A:THR59 4.9 76.3 1.0 CA A:MET58 4.9 79.4 1.0 O A:HIS87 4.9 92.9 1.0 CG2 A:THR59 5.0 75.8 1.0

Cadmium binding site 2 out of 4 in the Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd202 b:0.1 occ:1.00 SG A:CYS112 2.6 1.0 1.0 SG A:CYS119 3.0 0.9 1.0 CB A:CYS119 3.1 0.8 1.0 CB A:CYS112 3.2 0.8 1.0 SG B:CYS77 3.3 0.7 1.0 O A:CYS112 3.4 0.4 1.0 CA A:CYS119 3.9 0.6 1.0 CA A:CYS112 4.0 0.2 1.0 C A:CYS112 4.0 0.1 1.0 CB B:CYS77 4.1 0.9 1.0 CA B:CYS77 4.2 0.3 1.0 O B:CYS77 4.3 0.2 1.0 CG2 A:ILE121 4.5 0.2 1.0 CG2 B:VAL80 4.5 0.6 1.0 CB A:ILE121 4.7 0.3 1.0 C B:CYS77 4.7 1.0 1.0 N A:CYS119 4.9 0.3 1.0 C A:CYS119 4.9 0.6 1.0

Cadmium binding site 3 out of 4 in the Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd1001 b:0.0 occ:1.00 SG B:CYS112 2.6 0.1 1.0 SG B:CYS119 3.0 0.9 1.0 SG A:CYS77 3.1 0.1 1.0 CB B:CYS119 3.2 0.5 1.0 CB B:CYS112 3.3 0.1 1.0 O B:CYS112 3.5 0.2 1.0 CB A:CYS77 4.0 0.7 1.0 CA B:CYS119 4.0 0.1 1.0 O A:CYS77 4.1 0.7 1.0 CA A:CYS77 4.1 0.1 1.0 CA B:CYS112 4.1 0.2 1.0 C B:CYS112 4.1 0.1 1.0 CG2 A:VAL80 4.4 0.6 1.0 CG2 B:ILE121 4.5 0.6 1.0 C A:CYS77 4.5 0.7 1.0 CB B:ILE121 4.8 0.1 1.0 N B:CYS119 4.9 1.0 1.0 C B:CYS119 5.0 0.6 1.0

Cadmium binding site 4 out of 4 in the Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd1002 b:0.8 occ:1.00 OE1 B:GLU62 2.3 85.7 1.0 OE2 B:GLU62 2.4 1.0 1.0 ND1 B:HIS87 2.4 90.0 1.0 NE2 A:HIS145 2.5 0.1 1.0 ND1 B:HIS90 2.6 0.8 1.0 CD B:GLU62 2.6 90.8 1.0 CE1 B:HIS87 3.2 92.6 1.0 CE1 A:HIS145 3.2 0.3 1.0 CE1 B:HIS90 3.4 0.3 1.0 CG B:HIS87 3.5 91.3 1.0 CG B:HIS90 3.6 0.6 1.0 CD2 A:HIS145 3.6 0.7 1.0 CB B:HIS87 3.9 90.7 1.0 CB B:HIS90 3.9 0.8 1.0 CA B:HIS87 4.0 89.7 1.0 CG B:GLU62 4.1 86.8 1.0 NE2 B:HIS87 4.4 85.2 1.0 ND1 A:HIS145 4.4 0.3 1.0 CD2 B:HIS87 4.5 87.8 1.0 NE2 B:HIS90 4.6 0.3 1.0 CG A:HIS145 4.6 0.8 1.0 CD2 B:HIS90 4.7 0.5 1.0 O B:ASP57 4.7 85.1 1.0 N B:THR59 4.8 72.5 1.0 N B:HIS87 4.9 93.1 1.0 CA B:MET58 4.9 81.8 1.0 O B:HIS87 4.9 89.8 1.0 CG2 B:THR59 5.0 81.4 1.0

X.C.Liu, H.Chen. Crystal Structure of the Transcription Regulator Cadr N81M Mutant From P. Putida in Complex with Cadmium(II) and Dna To Be Published.