Cadmium in PDB 6v3i: K2P2.1(Trek-1)I110D:Rur Bound Channel Structure

The structure of K2P2.1(Trek-1)I110D:Rur Bound Channel Structure, PDB code: 6v3i was solved by L.Pope, M.Lolicato, D.L.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 3.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.945, 120.303, 127.818, 90.00, 90.00, 90.00
R / Rfree (%)	27.6 / 32.8

The structure of K2P2.1(Trek-1)I110D:Rur Bound Channel Structure also contains other interesting chemical elements:

Potassium	(K)	5 atoms
Ruthenium	(Ru)	3 atoms

The binding sites of Cadmium atom in the K2P2.1(Trek-1)I110D:Rur Bound Channel Structure (pdb code 6v3i). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the K2P2.1(Trek-1)I110D:Rur Bound Channel Structure, PDB code: 6v3i:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in the K2P2.1(Trek-1)I110D:Rur Bound Channel Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of K2P2.1(Trek-1)I110D:Rur Bound Channel Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd410 b:0.8 occ:1.00 OE1 A:GLU309 2.5 1.0 1.0 NE2 A:HIS313 2.8 0.8 1.0 CE1 A:HIS313 3.0 0.1 1.0 CD A:GLU309 3.7 0.7 1.0 CD2 A:HIS313 3.9 0.8 1.0 ND1 A:HIS313 4.0 0.0 1.0 OE2 A:GLU309 4.5 0.1 1.0 CG A:HIS313 4.5 0.7 1.0 CB A:GLU309 4.6 0.9 1.0 CG A:GLU309 4.7 0.2 1.0 CA A:GLU309 4.9 0.9 1.0 O A:GLU309 5.0 0.1 1.0

Cadmium binding site 2 out of 3 in the K2P2.1(Trek-1)I110D:Rur Bound Channel Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of K2P2.1(Trek-1)I110D:Rur Bound Channel Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd401 b:0.5 occ:1.00 CE1 B:HIS126 3.0 0.0 1.0 OD1 B:ASP263 3.2 0.5 1.0 NE2 B:HIS126 3.5 0.2 1.0 OD2 B:ASP263 3.6 0.4 1.0 CG B:ASP263 3.7 0.9 1.0 CD1 B:ILE115 4.0 0.4 1.0 ND1 B:HIS126 4.2 0.0 1.0 O B:GLY261 4.6 0.7 1.0 CD2 B:HIS126 4.8 0.3 1.0

Cadmium binding site 3 out of 3 in the K2P2.1(Trek-1)I110D:Rur Bound Channel Structure


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of K2P2.1(Trek-1)I110D:Rur Bound Channel Structure within 5.0Å range: probe atom residue distance (Å) B Occ B:Cd407 b:0.7 occ:1.01 OE2 B:GLU309 4.3 0.0 1.0 OE1 B:GLU309 4.7 0.9 1.0 CD B:GLU309 4.9 0.2 1.0

L.Pope, M.Lolicato, D.L.Minor Jr.. Polynuclear Ruthenium Amines Inhibit K2PCHANNELS Via A "Finger in the Dam" Mechanism. Cell Chem Biol 2020.
ISSN: ESSN 2451-9456
PubMed: 32059793
DOI: 10.1016/J.CHEMBIOL.2020.01.011