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Cadmium in PDB 7u1r: Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01

Protein crystallography data

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r was solved by C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.27 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.59, 78.54, 111.26, 90, 90, 90
R / Rfree (%) 18.3 / 19.6

Other elements in 7u1r:

The structure of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Zinc (Zn) 1 atom
Sodium (Na) 1 atom

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 (pdb code 7u1r). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01, PDB code: 7u1r:

Cadmium binding site 1 out of 1 in 7u1r

Go back to Cadmium Binding Sites List in 7u1r
Cadmium binding site 1 out of 1 in the Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd401

b:27.9
occ:1.00
OE2 A:GLU154 2.3 29.9 1.0
OE1 A:GLU154 2.3 22.5 1.0
CD2 A:HIS151 2.5 33.9 1.0
CD A:GLU154 2.7 27.8 1.0
NE2 A:HIS151 3.3 34.8 1.0
CG A:HIS151 3.4 33.0 1.0
CB A:HIS151 4.0 28.7 1.0
CG A:GLU154 4.2 25.4 1.0
O A:HOH625 4.3 49.0 1.0
CE1 A:HIS151 4.4 34.9 1.0
ND1 A:HIS151 4.5 36.3 1.0
O A:HOH597 4.7 45.0 1.0
CA A:HIS151 4.7 26.9 1.0
CB A:GLU154 5.0 20.5 1.0

Reference:

C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S1185-1193 K1191N Mutant (Rlnevannl) Presented By Hla-A*02:01 To Be Published.
Page generated: Thu Jul 10 15:35:49 2025

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