Cadmium in PDB 7um2: Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01

The structure of Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01, PDB code: 7um2 was solved by C.Szeto, S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.81 / 1.63
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.171, 79.105, 110.86, 90, 90, 90
R / Rfree (%)	17.9 / 19.5

The structure of Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01 also contains other interesting chemical elements:

Zinc	(Zn)	1 atom
Sodium	(Na)	1 atom

The binding sites of Cadmium atom in the Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01 (pdb code 7um2). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01, PDB code: 7um2:

Cadmium binding site 1 out of 1 in the Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd402 b:23.7 occ:1.00 CD2 A:HIS151 2.3 26.4 1.0 OE2 A:GLU154 2.4 24.0 1.0 OE1 A:GLU154 2.4 20.6 1.0 CD A:GLU154 2.7 19.2 1.0 NE2 A:HIS151 3.1 26.9 1.0 CG A:HIS151 3.3 26.9 1.0 CB A:HIS151 4.0 23.4 1.0 O A:HOH687 4.1 37.1 1.0 CE1 A:HIS151 4.2 27.4 1.0 CG A:GLU154 4.2 18.9 1.0 ND1 A:HIS151 4.3 30.1 1.0 O A:HOH549 4.7 30.6 1.0 O A:HOH553 4.7 34.6 1.0 CA A:HIS151 4.9 22.8 1.0 CB A:GLU154 5.0 18.7 1.0

C.Szeto, S.Gras. Sars-Cov-2 Spike-Derived Peptide S417-425 K417T Mutant (Tiadynykl) Presented By Hla-A*02:01 To Be Published.