Cadmium in PDB 8dwz: Ca Domain of Vansa Histidine Kinase, 7 Kev Data

All present enzymatic activity of Ca Domain of Vansa Histidine Kinase, 7 Kev Data:
2.7.13.3;

The structure of Ca Domain of Vansa Histidine Kinase, 7 Kev Data, PDB code: 8dwz was solved by P.J.Loll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.14 / 2.21
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	69.83, 94.4, 29.77, 90, 90, 90
R / Rfree (%)	18.4 / 23.3

The binding sites of Cadmium atom in the Ca Domain of Vansa Histidine Kinase, 7 Kev Data (pdb code 8dwz). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Ca Domain of Vansa Histidine Kinase, 7 Kev Data, PDB code: 8dwz:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Ca Domain of Vansa Histidine Kinase, 7 Kev Data


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Ca Domain of Vansa Histidine Kinase, 7 Kev Data within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd401 b:48.1 occ:1.00 OD1 A:ASP231 2.3 47.8 1.0 NE2 A:HIS229 2.4 47.6 1.0 OD2 A:ASP231 2.4 43.3 1.0 CG A:ASP231 2.7 47.2 1.0 CE1 A:HIS229 3.1 45.5 1.0 CD2 A:HIS229 3.5 44.7 1.0 CB A:ASP231 4.2 42.4 1.0 ND1 A:HIS229 4.4 42.6 1.0 CG A:HIS229 4.6 45.0 1.0 CG2 A:THR263 4.7 51.3 1.0 CA A:ASP231 4.9 46.9 1.0

Cadmium binding site 2 out of 2 in the Ca Domain of Vansa Histidine Kinase, 7 Kev Data


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Ca Domain of Vansa Histidine Kinase, 7 Kev Data within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd402 b:46.9 occ:1.00 ND1 A:HIS257 2.2 40.8 1.0 O A:HOH514 2.7 40.4 1.0 CE1 A:HIS257 3.1 45.0 1.0 CG A:HIS257 3.3 39.6 1.0 CB A:HIS257 3.7 36.1 1.0 CA A:HIS257 4.2 39.9 1.0 NE2 A:HIS257 4.3 42.1 1.0 CD2 A:HIS257 4.4 36.0 1.0 O A:ILE256 4.5 39.8 1.0 N A:HIS257 5.0 37.3 1.0

K.C.Grasty, C.Guzik, E.J.D'lauro, S.B.Padrick, J.Beld, P.J.Loll. Structure of Vans From Vancomycin-Resistant Enterococci: A Sensor Kinase with Weak Atp Binding. J.Biol.Chem. V. 299 03001 2023.
ISSN: ESSN 1083-351X
PubMed: 36764524
DOI: 10.1016/J.JBC.2023.103001