Cadmium in PDB 8oyg: Crystal Structure of Asbtnm in Complex with Pantoate

The structure of Crystal Structure of Asbtnm in Complex with Pantoate, PDB code: 8oyg was solved by P.Becker, A.D.Cameron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.00 / 2.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	84.963, 89.364, 53.052, 90, 124.4, 90
R / Rfree (%)	22.6 / 26.6

The structure of Crystal Structure of Asbtnm in Complex with Pantoate also contains other interesting chemical elements:

Sodium

(Na)

2 atoms

The binding sites of Cadmium atom in the Crystal Structure of Asbtnm in Complex with Pantoate (pdb code 8oyg). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 2 binding sites of Cadmium where determined in the Crystal Structure of Asbtnm in Complex with Pantoate, PDB code: 8oyg:
Jump to Cadmium binding site number: 1; 2;

Cadmium binding site 1 out of 2 in the Crystal Structure of Asbtnm in Complex with Pantoate


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of Asbtnm in Complex with Pantoate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1005 b:52.1 occ:1.00 NE2 A:HIS181 2.7 45.6 1.0 O A:HOH1112 2.7 45.4 1.0 O A:HOH1124 2.8 43.9 1.0 HG1 A:THR188 3.5 89.4 1.0 O A:GLY185 3.5 59.0 1.0 CD2 A:HIS181 3.6 46.1 1.0 HD2 A:HIS181 3.7 55.3 1.0 CE1 A:HIS181 3.7 40.9 1.0 HA A:SER186 3.8 68.5 1.0 HE1 A:HIS181 3.8 49.1 1.0 OG1 A:THR188 3.9 74.5 1.0 C A:GLY185 4.2 54.5 1.0 CA A:SER186 4.7 57.1 1.0 HA2 A:GLY185 4.7 58.0 1.0 N A:SER186 4.8 58.6 1.0 CG A:HIS181 4.8 45.9 1.0 ND1 A:HIS181 4.8 47.9 1.0 HG21 A:THR188 4.9 58.9 1.0 HG2 A:GLU189 4.9 84.7 1.0

Cadmium binding site 2 out of 2 in the Crystal Structure of Asbtnm in Complex with Pantoate


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Crystal Structure of Asbtnm in Complex with Pantoate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cd1006 b:87.0 occ:1.00 HE2 A:HIS66 2.0 92.2 1.0 NE2 A:HIS66 2.7 76.8 1.0 O A:HOH1125 2.8 66.9 1.0 HD2 A:HIS66 3.1 80.6 1.0 CD2 A:HIS66 3.3 67.2 1.0 HB2 A:LYS65 3.8 82.4 1.0 CE1 A:HIS66 3.9 75.8 1.0 HB3 A:LYS65 4.0 82.4 1.0 HE1 A:HIS66 4.3 91.0 1.0 CB A:LYS65 4.3 68.7 1.0 HG3 A:LYS65 4.3 82.9 1.0 CG A:HIS66 4.6 70.5 1.0 HA A:ILE62 4.6 65.9 1.0 ND1 A:HIS66 4.9 75.4 1.0 CG A:LYS65 4.9 69.1 1.0

P.Becker, F.B.Naughton, D.H.Brotherton, R.Pacheco-Gomez, O.Beckstein, A.D.Cameron. Mechanism of Substrate Binding and Transport in Bass Transporters. To Be Published.