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Cadmium in PDB 9g39: Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperature (Data Set at 100 K)

Protein crystallography data

The structure of Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperature (Data Set at 100 K), PDB code: 9g39 was solved by L.Di Costanzo, S.La Gatta, M.Chino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.02 / 1.28
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 37.07, 56.654, 19.331, 90, 90, 90
R / Rfree (%) 15.3 / n/a

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperature (Data Set at 100 K) (pdb code 9g39). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperature (Data Set at 100 K), PDB code: 9g39:

Cadmium binding site 1 out of 1 in 9g39

Go back to Cadmium Binding Sites List in 9g39
Cadmium binding site 1 out of 1 in the Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperature (Data Set at 100 K)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure of the Artificial Protein Metp in Complex with Cadmium Ion at Different Temperature (Data Set at 100 K) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cd101

b:10.8
occ:1.00
SG C:CYS2 2.5 11.0 1.0
SG C:CYS20 2.6 10.0 1.0
SG C:CYS17 2.6 9.3 1.0
SG C:CYS5 2.6 13.8 1.0
HB3 C:CYS5 3.0 19.4 1.0
HB3 C:CYS2 3.1 13.5 1.0
H C:CYS20 3.2 10.5 1.0
HB3 C:CYS17 3.2 8.8 1.0
HB3 C:CYS20 3.3 12.2 1.0
CB C:CYS2 3.3 11.3 1.0
CB C:CYS17 3.3 7.4 1.0
HB2 C:CYS2 3.4 13.5 1.0
CB C:CYS5 3.4 16.1 1.0
HB2 C:CYS17 3.4 8.8 1.0
H C:CYS5 3.4 12.4 1.0
CB C:CYS20 3.5 10.2 1.0
HB3 C:ASN19 3.7 16.2 1.0
HB3 C:ALA22 3.8 14.7 1.0
HB2 C:ASP4 3.8 17.2 1.0
N C:CYS5 3.9 10.4 1.0
HB3 C:ALA7 3.9 17.6 1.0
N C:CYS20 3.9 8.7 1.0
HD21 C:ASN19 4.1 16.4 1.0
H C:ALA22 4.1 11.3 1.0
CA C:CYS5 4.2 12.5 1.0
HB2 C:CYS5 4.2 19.4 1.0
HB2 C:ALA22 4.2 14.7 1.0
H C:ALA7 4.2 13.0 1.0
CA C:CYS20 4.3 9.4 1.0
HB2 C:CYS20 4.3 12.2 1.0
HB3 C:ASP4 4.4 17.2 1.0
HB2 C:ALA7 4.4 17.6 1.0
CB C:ALA22 4.5 12.3 1.0
H C:ASP4 4.5 12.7 1.0
CB C:ASP4 4.5 14.3 1.0
H C:GLY6 4.6 11.1 1.0
CB C:ALA7 4.6 14.7 1.0
H C:ASN19 4.6 11.1 1.0
C C:ASP4 4.7 9.2 1.0
CB C:ASN19 4.7 13.5 1.0
H C:GLY21 4.7 12.6 1.0
CA C:CYS2 4.7 10.6 1.0
CA C:CYS17 4.8 8.9 1.0
C C:CYS5 4.9 12.8 1.0
ND2 C:ASN19 4.9 13.7 1.0
C C:CYS20 4.9 10.3 1.0
N C:ALA22 4.9 9.4 1.0
N C:GLY6 4.9 9.3 1.0
HA C:CYS5 5.0 15.0 1.0
N C:ALA7 5.0 10.8 1.0
C C:ASN19 5.0 13.9 1.0
CA C:ASP4 5.0 9.2 1.0

Reference:

L.Di Costanzo, L.Di Costanzo, S.La Gatta, M.Chino. N/A N/A.
Page generated: Thu Jul 10 16:02:33 2025

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