Chemical elements
  Cadmium
    Isotopes
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    Physical Properties
    Chemical Properties
    PDB 1a4k-1exq
    PDB 1f48-1ihu
    PDB 1ii0-1mhu
    PDB 1mms-1qvg
      1mms
      1mnu
      1mox
      1mpa
      1mqo
      1mrb
      1mrt
      1mup
      1mwr
      1mws
      1mwt
      1mwu
      1n0i
      1n2z
      1n8r
      1ncx
      1ng1
      1nji
      1np8
      1npe
      1nz4
      1oeb
      1oee
      1on3
      1on9
      1oo2
      1orq
      1oyr
      1p8z
      1p9e
      1pck
      1pcw
      1pe1
      1pew
      1pl3
      1psc
      1pw3
      1q7y
      1q7z
      1q81
      1q82
      1q85
      1q86
      1q8a
      1q8j
      1qjk
      1qjl
      1qjw
      1qvf
      1qvg
    PDB 1qy0-1wb6
    PDB 1wje-2avp
    PDB 2b3p-2j6e
    PDB 2jdz-2x05
    PDB 2x09-3ccj
    PDB 3ccl-3ggf
    PDB 3h1u-3p5v
    PDB 3p5w-8ice

Cadmium in the structure of 2.0 Angstrom Structure Of Btuf, the Vitamin B12 Binding Protein of E. Coli (pdb 1n2z)






The binding sites of Cadmium atom in the structure of 2.0 Angstrom Structure Of Btuf, the Vitamin B12 Binding Protein of E. Coli (pdb code 1n2z). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 1n2z structure was solved by E.L.BORTHS, K.P.LOCHER, A.T.LEE, D.C.REES, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.0
Space groupP65
a (A)133.066
b (A)133.066
c (A)67.687
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)18.9
Rfree (%)21


Cadmium Binding Sites:

Cadmium binding site 1 out of 22 in 1n2z


Cadmium binding site 1 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 1 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Thr215, A: Ser241, A: Glu245, A: Cd404, A: Cl426, A: Cl427, A: Cl429, A: Cnc400, A: Hoh443, A: Hoh459, A: Hoh607, A: Hoh621,

conact list:


AtomAtomDistance (A)
CdCB A:Thr2154.77
CdOG1 A:Thr2153.75
CdOG A:Ser2414.91
CdOE1 A:Glu2452.55
CdOE2 A:Glu2452.45
CdCD A:Glu2452.84
CdCG A:Glu2454.35
CdCD A:Cd4043.87
CdCL A:Cl4262.52
CdCL A:Cl4272.66
CdCL A:Cl4293.24
CdN22 A:Cnc4004.95
CdC37 A:Cnc4004.47
CdO A:Hoh4432.56
CdO A:Hoh4592.70
CdO A:Hoh6074.74
CdO A:Hoh6213.68

interactive model:


Cadmium binding site 2 out of 22 in 1n2z


Cadmium binding site 2 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 2 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Tyr50, A: Asp52, A: Asp242, A: Arg246, A: Cnc400, A: Hoh431, A: Hoh442, A: Hoh462, A: Hoh481, A: Hoh517,

conact list:


AtomAtomDistance (A)
CdO A:Tyr504.92
CdCB A:Asp524.59
CdOD2 A:Asp522.50
CdOD1 A:Asp522.98
CdCG A:Asp523.10
CdCB A:Asp2424.29
CdOD2 A:Asp2422.41
CdOD1 A:Asp2422.53
CdCG A:Asp2422.79
CdCZ A:Arg2463.94
CdNE A:Arg2464.73
CdNH2 A:Arg2463.14
CdNH1 A:Arg2464.44
CdN40 A:Cnc4004.47
CdO A:Hoh4312.48
CdO A:Hoh4422.58
CdO A:Hoh4624.68
CdO A:Hoh4814.52
CdO A:Hoh5174.20

interactive model:


Cadmium binding site 3 out of 22 in 1n2z


Cadmium binding site 3 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 3 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gly163, A: Thr215, A: Gly216, A: Gln220, A: Ser241, A: Glu245, A: Cd402, A: Cl428, A: Cl429, A: Hoh443, A: Hoh459, A: Hoh515,

conact list:


AtomAtomDistance (A)
CdN A:Gly1634.83
CdO A:Thr2152.58
CdN A:Thr2153.76
CdCB A:Thr2153.52
CdCG2 A:Thr2154.75
CdOG1 A:Thr2152.40
CdC A:Thr2153.44
CdCA A:Thr2153.76
CdN A:Gly2164.61
CdOE1 A:Gln2204.24
CdOG A:Ser2414.57
CdOE2 A:Glu2454.52
CdCD A:Cd4023.87
CdCL A:Cl4282.72
CdCL A:Cl4293.59
CdO A:Hoh4432.65
CdO A:Hoh4592.61
CdO A:Hoh5152.69

interactive model:


Cadmium binding site 4 out of 22 in 1n2z


Cadmium binding site 4 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 4 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp266, A: Cd413, A: Hoh445, A: Hoh475,

conact list:


AtomAtomDistance (A)
CdCB A:Asp2664.39
CdOD2 A:Asp2662.58
CdOD1 A:Asp2662.49
CdCG A:Asp2662.88
CdCD A:Cd4133.98
CdO A:Hoh4452.71
CdO A:Hoh4754.43

interactive model:


Cadmium binding site 5 out of 22 in 1n2z


Cadmium binding site 5 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 5 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg86, A: Trp106, B: Trp106, B: Val107, B: Asp108, B: Ala109, B: Gln114, A: Hoh524, B: Hoh429, B: Hoh482,

conact list:


AtomAtomDistance (A)
CdCZ A:Arg864.13
CdNH2 A:Arg863.03
CdNH1 A:Arg864.41
CdCD1 A:Trp1064.21
CdCG A:Trp1064.93
CdNE1 A:Trp1064.71
CdO B:Trp1064.43
CdCB B:Val1074.60
CdC B:Val1074.07
CdCG1 B:Val1074.07
CdCA B:Val1073.93
CdO B:Asp1084.28
CdN B:Asp1083.28
CdCB B:Asp1084.89
CdC B:Asp1083.77
CdCA B:Asp1084.16
CdN B:Ala1093.52
CdCB B:Ala1094.24
CdCA B:Ala1093.89
CdO B:Gln1144.44
CdOE1 B:Gln1144.54
CdCB B:Gln1144.50
CdCG B:Gln1144.86
CdO A:Hoh5243.68
CdO B:Hoh4292.98
CdO B:Hoh4822.91

interactive model:


Cadmium binding site 6 out of 22 in 1n2z


Cadmium binding site 6 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 6 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Trp106, A: Val107, A: Asp108, A: Ala109, A: Gln114, B: Arg86, B: Trp106, A: Hoh436, A: Hoh494, B: Hoh539,

conact list:


AtomAtomDistance (A)
CdO A:Trp1064.46
CdCB A:Val1074.60
CdC A:Val1074.12
CdCG1 A:Val1074.09
CdCA A:Val1073.95
CdO A:Asp1084.33
CdN A:Asp1083.37
CdCB A:Asp1084.95
CdC A:Asp1083.82
CdCA A:Asp1084.23
CdN A:Ala1093.55
CdCB A:Ala1094.22
CdCA A:Ala1093.88
CdO A:Gln1144.44
CdOE1 A:Gln1144.39
CdCB A:Gln1144.44
CdCD A:Gln1144.98
CdCG A:Gln1144.79
CdCZ B:Arg864.15
CdNH2 B:Arg863.02
CdNH1 B:Arg864.44
CdCD1 B:Trp1064.18
CdCG B:Trp1064.94
CdNE1 B:Trp1064.71
CdO A:Hoh4362.99
CdO A:Hoh4943.14
CdO B:Hoh5393.32

interactive model:


Cadmium binding site 7 out of 22 in 1n2z


Cadmium binding site 7 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 7 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Pro235, A: Asp266, A: Cd405, A: Hoh445, A: Hoh475, A: Hoh550, A: Hoh562,

conact list:


AtomAtomDistance (A)
CdCD A:Pro2354.52
CdCG A:Pro2354.20
CdCB A:Asp2664.30
CdOD2 A:Asp2662.55
CdOD1 A:Asp2664.32
CdCG A:Asp2663.53
CdCD A:Cd4053.98
CdO A:Hoh4452.67
CdO A:Hoh4752.79
CdO A:Hoh5504.75
CdO A:Hoh5622.86

interactive model:


Cadmium binding site 8 out of 22 in 1n2z


Cadmium binding site 8 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 8 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asn177, A: Glu181, A: Lys190, B: Arg92,

conact list:


AtomAtomDistance (A)
CdND2 A:Asn1774.57
CdOE1 A:Glu1812.53
CdOE2 A:Glu1812.56
CdCD A:Glu1812.89
CdCG A:Glu1814.41
CdCE A:Lys1903.14
CdCD A:Lys1904.43
CdNZ A:Lys1902.79
CdCZ B:Arg923.71
CdNE B:Arg924.61
CdNH2 B:Arg922.56
CdNH1 B:Arg924.35

interactive model:


Cadmium binding site 9 out of 22 in 1n2z


Cadmium binding site 9 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 9 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp130, A: Glu133, A: Hoh504,

conact list:


AtomAtomDistance (A)
CdCB A:Asp1304.62
CdOD2 A:Asp1302.89
CdOD1 A:Asp1302.75
CdCG A:Asp1303.16
CdOE1 A:Glu1334.97
CdO A:Hoh5042.77

interactive model:


Cadmium binding site 10 out of 22 in 1n2z


Cadmium binding site 10 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 10 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp219, A: Hoh484, A: Hoh499, A: Hoh528,

conact list:


AtomAtomDistance (A)
CdCB A:Asp2194.30
CdOD2 A:Asp2192.45
CdOD1 A:Asp2192.48
CdCG A:Asp2192.79
CdO A:Hoh4842.57
CdO A:Hoh4994.35
CdO A:Hoh5282.63

interactive model:


Cadmium binding site 11 out of 22 in 1n2z


Cadmium binding site 11 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 11 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gly217, A: Asp219, A: Hoh499,

conact list:


AtomAtomDistance (A)
CdN A:Gly2174.89
CdCA A:Gly2174.55
CdCB A:Asp2194.53
CdOD2 A:Asp2193.72
CdCG A:Asp2194.44
CdO A:Hoh4992.67

interactive model:


Cadmium binding site 12 out of 22 in 1n2z


Cadmium binding site 12 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 12 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg86, A: Asn89, A: Glu91, A: Hoh434, A: Hoh552, A: Hoh603, A: Hoh625, A: Hoh629,

conact list:


AtomAtomDistance (A)
CdO A:Arg864.10
CdO A:Asn894.84
CdN A:Glu914.83
CdOE1 A:Glu912.50
CdOE2 A:Glu912.75
CdCD A:Glu912.98
CdCG A:Glu914.50
CdO A:Hoh4344.84
CdO A:Hoh5523.37
CdO A:Hoh6032.78
CdO A:Hoh6254.48
CdO A:Hoh6293.56

interactive model:


Cadmium binding site 13 out of 22 in 1n2z


Cadmium binding site 13 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 13 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp108, B: Cd420, A: Hoh513, A: Hoh594, A: Hoh623, B: Hoh510, B: Hoh529, B: Hoh597,

conact list:


AtomAtomDistance (A)
CdCB A:Asp1084.66
CdCG A:Asp1084.99
CdCD B:Cd4203.99
CdO A:Hoh5133.08
CdO A:Hoh5943.22
CdO A:Hoh6234.28
CdO B:Hoh5103.91
CdO B:Hoh5293.54
CdO B:Hoh5974.95

interactive model:


Cadmium binding site 14 out of 22 in 1n2z


Cadmium binding site 14 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 14 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Thr215, B: Ser241, B: Glu245, B: Cd408, B: Cl424, B: Cnc401, B: Hoh430, B: Hoh438, B: Hoh481, B: Hoh522, B: Hoh530,

conact list:


AtomAtomDistance (A)
CdCB B:Thr2154.77
CdOG1 B:Thr2153.65
CdOG B:Ser2414.76
CdOE1 B:Glu2452.50
CdOE2 B:Glu2452.51
CdCD B:Glu2452.85
CdCG B:Glu2454.36
CdCD B:Cd4083.75
CdCL B:Cl4242.49
CdN22 B:Cnc4014.88
CdC37 B:Cnc4014.46
CdC6 B:Cnc4014.97
CdO B:Hoh4302.49
CdO B:Hoh4382.53
CdO B:Hoh4812.71
CdO B:Hoh5224.39
CdO B:Hoh5304.14

interactive model:


Cadmium binding site 15 out of 22 in 1n2z


Cadmium binding site 15 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 15 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Tyr50, B: Asp52, B: Asp242, B: Arg246, B: Cl425, B: Cnc401, B: Hoh426, B: Hoh436, B: Hoh498,

conact list:


AtomAtomDistance (A)
CdO B:Tyr504.77
CdCB B:Asp524.53
CdOD2 B:Asp522.51
CdOD1 B:Asp522.86
CdCG B:Asp523.03
CdCB B:Asp2424.23
CdOD2 B:Asp2422.41
CdOD1 B:Asp2422.44
CdCG B:Asp2422.74
CdCZ B:Arg2463.80
CdNE B:Arg2464.61
CdNH2 B:Arg2463.08
CdNH1 B:Arg2464.23
CdCL B:Cl4252.57
CdN40 B:Cnc4014.47
CdO B:Hoh4262.49
CdO B:Hoh4364.44
CdO B:Hoh4984.45

interactive model:


Cadmium binding site 16 out of 22 in 1n2z


Cadmium binding site 16 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 16 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gly163, B: Ile214, B: Thr215, B: Gly216, B: Gln220, B: Ser241, B: Glu245, B: Cd406, B: Hoh438, B: Hoh468, B: Hoh481,

conact list:


AtomAtomDistance (A)
CdN B:Gly1634.61
CdC B:Ile2144.97
CdO B:Thr2152.52
CdN B:Thr2153.70
CdCB B:Thr2153.58
CdCG2 B:Thr2154.74
CdOG1 B:Thr2152.44
CdC B:Thr2153.32
CdCA B:Thr2153.73
CdN B:Gly2164.40
CdCA B:Gly2164.84
CdNE2 B:Gln2204.64
CdOE1 B:Gln2204.40
CdCD B:Gln2204.95
CdOG B:Ser2414.84
CdOE2 B:Glu2454.32
CdCD B:Cd4063.75
CdO B:Hoh4382.66
CdO B:Hoh4682.67
CdO B:Hoh4812.60

interactive model:


Cadmium binding site 17 out of 22 in 1n2z


Cadmium binding site 17 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 17 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg92, B: Lys172, B: Glu173, A: Hoh434, B: Hoh519, B: Hoh531, B: Hoh566, B: Hoh587,

conact list:


AtomAtomDistance (A)
CdN A:Arg924.82
CdCB A:Arg924.49
CdCD A:Arg924.98
CdCG A:Arg924.93
CdO B:Lys1724.96
CdCE B:Lys1724.67
CdCD B:Lys1724.88
CdOE1 B:Glu1732.82
CdOE2 B:Glu1732.55
CdCD B:Glu1733.05
CdCG B:Glu1734.56
CdO A:Hoh4342.72
CdO B:Hoh5192.64
CdO B:Hoh5314.68
CdO B:Hoh5664.23
CdO B:Hoh5872.66

interactive model:


Cadmium binding site 18 out of 22 in 1n2z


Cadmium binding site 18 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 18 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gln149, B: Tyr150, B: Gln256, B: Hoh432,

conact list:


AtomAtomDistance (A)
CdNE2 B:Gln1494.19
CdOE1 B:Gln1493.54
CdCD B:Gln1494.28
CdOH B:Tyr1504.80
CdO B:Gln2564.81
CdNE2 B:Gln2563.59
CdCB B:Gln2563.95
CdCD B:Gln2564.07
CdCG B:Gln2563.77
CdCA B:Gln2564.61
CdO B:Hoh4322.96

interactive model:


Cadmium binding site 19 out of 22 in 1n2z


Cadmium binding site 19 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 19 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Arg157, B: Cd422, B: Hoh551,

conact list:


AtomAtomDistance (A)
CdNH2 B:Arg1574.50
CdCD B:Cd4223.10
CdO B:Hoh5513.20

interactive model:


Cadmium binding site 20 out of 22 in 1n2z


Cadmium binding site 20 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 20 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp108, A: Cd421, B: Hoh510, B: Hoh529, B: Hoh574, B: Hoh596, B: Hoh597, B: Hoh601,

conact list:


AtomAtomDistance (A)
CdCB B:Asp1084.57
CdCG B:Asp1084.94
CdCD A:Cd4213.99
CdO B:Hoh5103.87
CdO B:Hoh5292.87
CdO B:Hoh5742.91
CdO B:Hoh5964.66
CdO B:Hoh5972.75
CdO B:Hoh6014.08

interactive model:


Cadmium binding site 21 out of 22 in 1n2z


Cadmium binding site 21 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 21 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ile188, B: Asp191, B: Arg207, B: Cd416, B: Hoh551, B: Hoh589,

conact list:


AtomAtomDistance (A)
CdO B:Ile1884.59
CdCB B:Asp1914.19
CdOD2 B:Asp1912.54
CdOD1 B:Asp1914.22
CdCG B:Asp1913.45
CdCD B:Arg2074.91
CdCZ B:Arg2074.08
CdNE B:Arg2074.72
CdNH2 B:Arg2074.60
CdNH1 B:Arg2073.44
CdCD B:Cd4163.10
CdO B:Hoh5513.11
CdO B:Hoh5893.24

interactive model:


Cadmium binding site 22 out of 22 in 1n2z


Cadmium binding site 22 out of 22 in 1n2z
Click to enlarge
stereopicture of Cadmium binding site 22 out of 22 in 1n2z
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Cadmium in the PDB 1n2z. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu173, B: Arg86, B: Asn89, B: Glu91, A: Hoh537, B: Hoh528,

conact list:


AtomAtomDistance (A)
CdOE1 A:Glu1734.21
CdOE2 A:Glu1732.59
CdCD A:Glu1733.68
CdCG A:Glu1734.82
CdO B:Arg863.43
CdCB B:Arg864.87
CdC B:Arg864.46
CdCA B:Arg864.93
CdO B:Asn894.81
CdN B:Glu914.87
CdOE1 B:Glu914.66
CdCB B:Glu914.63
CdOE2 B:Glu912.59
CdCD B:Glu913.47
CdCG B:Glu913.57
CdO A:Hoh5372.75
CdO B:Hoh5282.73

interactive model:




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