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Cadmium in PDB 1oeb: Mona/Gads SH3C Domain

Protein crystallography data

The structure of Mona/Gads SH3C Domain, PDB code: 1oeb was solved by M.Harkiolaki, M.Lewitzky, R.J.C.Gilbert, E.Y.Jones, R.P.Bourette, G.Mouchiroud, H.Sondermann, I.Moarefi, S.M.Feller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.69 / 1.76
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 28.691, 72.072, 34.168, 90.00, 97.70, 90.00
R / Rfree (%) 17.1 / 23.5

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Mona/Gads SH3C Domain (pdb code 1oeb). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Mona/Gads SH3C Domain, PDB code: 1oeb:

Cadmium binding site 1 out of 1 in 1oeb

Go back to Cadmium Binding Sites List in 1oeb
Cadmium binding site 1 out of 1 in the Mona/Gads SH3C Domain


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Mona/Gads SH3C Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd1056

b:18.2
occ:1.00
O B:HOH2049 2.0 21.8 1.0
NE2 A:HIS42 2.3 18.4 1.0
NE2 B:HIS42 2.3 17.5 1.0
OE2 A:GLU24 2.3 17.1 1.0
OE1 B:GLU24 2.4 18.1 1.0
OE2 B:GLU24 2.5 16.8 1.0
OE1 A:GLU24 2.5 18.5 1.0
CD A:GLU24 2.7 19.3 1.0
CD B:GLU24 2.8 21.2 1.0
CE1 B:HIS42 3.2 17.3 1.0
CE1 A:HIS42 3.2 18.7 1.0
CD2 A:HIS42 3.3 14.4 1.0
CD2 B:HIS42 3.4 14.9 1.0
CG A:GLU24 4.1 22.7 1.0
O A:HOH2076 4.2 19.1 1.0
CG B:GLU24 4.3 19.9 1.0
O B:HOH2052 4.4 17.8 1.0
ND1 B:HIS42 4.4 16.8 1.0
ND1 A:HIS42 4.4 18.2 1.0
CG A:HIS42 4.4 16.0 1.0
CG B:HIS42 4.5 16.7 1.0
O A:HOH2077 4.7 25.7 1.0
O B:HOH2050 4.8 22.8 1.0
CD1 B:LEU41 4.9 15.5 1.0
CD1 A:LEU41 4.9 16.9 1.0

Reference:

M.Harkiolaki, M.Lewitzky, R.J.C.Gilbert, E.Y.Jones, R.P.Bourette, G.Mouchiroud, H.Sondermann, I.Moarefi, S.M.Feller. Structural Basis For SH3 Domain-Mediated High-Affinity Binding Between Mona/Gads and Slp-76 Embo J. V. 22 2571 2003.
ISSN: ISSN 0261-4189
PubMed: 12773374
DOI: 10.1093/EMBOJ/CDG258
Page generated: Fri Aug 28 12:17:28 2020
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