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Cadmium in PDB 1p9e: Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3

Enzymatic activity of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3

All present enzymatic activity of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3:
3.1.8.1;

Protein crystallography data

The structure of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3, PDB code: 1p9e was solved by Y.Dong, L.Sun, M.Bartlam, Z.Rao, X.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.40
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.020, 85.020, 199.773, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 25.9

Other elements in 1p9e:

The structure of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 also contains other interesting chemical elements:

Potassium (K) 4 atoms
Zinc (Zn) 3 atoms
Sodium (Na) 5 atoms

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 (pdb code 1p9e). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total only one binding site of Cadmium was determined in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3, PDB code: 1p9e:

Cadmium binding site 1 out of 1 in 1p9e

Go back to Cadmium Binding Sites List in 1p9e
Cadmium binding site 1 out of 1 in the Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cd1402

b:29.8
occ:1.00
 O B:HOH666 2.0 13.6 1.0
OD2 B:ASP255 2.1 21.2 1.0
NE2 B:HIS234 2.2 27.6 1.0
ND1 B:HIS149 2.3 25.6 1.0
NE2 B:HIS147 2.5 25.2 1.0
O B:HOH609 2.6 12.9 1.0
CE1 B:HIS149 3.0 24.7 1.0
CD2 B:HIS234 3.0 27.0 1.0
CD2 B:HIS147 3.1 23.7 1.0
CG B:ASP255 3.2 21.6 1.0
CE1 B:HIS234 3.2 27.4 1.0
CG B:HIS149 3.3 25.5 1.0
CB B:ASP255 3.7 21.4 1.0
CE1 B:HIS147 3.7 25.2 1.0
CB B:HIS149 3.8 25.3 1.0
ZN B:ZN1401 3.8 16.1 1.0
NE2 B:HIS149 4.1 28.3 1.0
CG B:HIS234 4.2 28.6 1.0
CD2 B:HIS149 4.2 27.5 1.0
ND1 B:HIS234 4.3 27.4 1.0
OD1 B:ASP255 4.3 18.5 1.0
CG B:HIS147 4.4 24.4 1.0
NE2 B:HIS152 4.6 22.9 1.0
ND1 B:HIS147 4.6 24.3 1.0
CD2 B:HIS152 4.8 22.4 1.0
OD1 B:ASP151 4.8 28.4 1.0

Reference:

Y.Dong, L.Sun, M.Bartlam, Z.Rao, X.Zhang. Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 To Be Published.
Page generated: Thu Jul 10 11:13:25 2025

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