The binding sites of Cadmium atom in the structure of Crystal Structure Analysis of Methyl Parathion Hydrolase From Pseudomonas Sp Wbc-3 (pdb code 1p9e). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom.
The 1p9e structure was solved by Y.DONG, L.SUN, M.BARTLAM, Z.RAO, X.ZHANG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 50.0-2.4 | | Space group | P43212 | | a (A) | 85.020 | | b (A) | 85.020 | | c (A) | 199.773 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 90.00 | | Rfactor (%) | 21.8 | | Rfree (%) | 25.9 |
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Cadmium binding site 1 out of 1 in 1p9e
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Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1p9e. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His147, B: His149, B: Asp151, B: His152, B: His234, B: Asp255, B: Zn1401, B: Hoh609, B: Hoh666, | conact list:
| Atom | Atom | Distance (A) | | Cd | NE2 B:His147 | 2.53 | | Cd | ND1 B:His147 | 4.64 | | Cd | CD2 B:His147 | 3.08 | | Cd | CE1 B:His147 | 3.73 | | Cd | CG B:His147 | 4.37 | | Cd | NE2 B:His149 | 4.07 | | Cd | CB B:His149 | 3.76 | | Cd | ND1 B:His149 | 2.29 | | Cd | CD2 B:His149 | 4.24 | | Cd | CE1 B:His149 | 2.97 | | Cd | CG B:His149 | 3.29 | | Cd | OD1 B:Asp151 | 4.82 | | Cd | NE2 B:His152 | 4.55 | | Cd | CD2 B:His152 | 4.77 | | Cd | NE2 B:His234 | 2.17 | | Cd | ND1 B:His234 | 4.27 | | Cd | CD2 B:His234 | 2.99 | | Cd | CE1 B:His234 | 3.24 | | Cd | CG B:His234 | 4.18 | | Cd | CB B:Asp255 | 3.72 | | Cd | OD2 B:Asp255 | 2.14 | | Cd | OD1 B:Asp255 | 4.28 | | Cd | CG B:Asp255 | 3.22 | | Cd | ZN B:Zn1401 | 3.84 | | Cd | O B:Hoh609 | 2.60 | | Cd | O B:Hoh666 | 2.03 |
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