Cadmium in the structure of High Resolution Crystal Structure Of JTO2, A Mutant of the Non- Amyloidogenic LAMBA6 Light Chain, Jto (pdb 1pew)

The binding sites of Cadmium atom in the structure of High Resolution Crystal Structure Of JTO2, A Mutant of the Non- Amyloidogenic LAMBA6 Light Chain, Jto (pdb code 1pew). This binding sites where shown with 5.0 Angstroms radius around Cadmium atom. The 1pew structure was solved by C.DEALWIS, V.GUPTA, M.WILKERSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 8.0-1.6 Space group P4122 a (A) 73.577 b (A) 73.577 c (A) 92.298 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 25.2 Rfree (%) 27.3 Cadmium Binding Sites: Cadmium binding site 1 out of 4 in 1pew Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Cadmium in the PDB 1pew. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp85, A: Arg103, A: Hoh903, A: Hoh904, A: Hoh905, A: Hoh907, A: Hoh938, conact list: Atom Atom Distance (A) Cd CB A:Asp85 4.29 Cd OD2 A:Asp85 2.31 Cd OD1 A:Asp85 2.36 Cd CG A:Asp85 2.74 Cd CB A:Arg103 4.33 Cd CD A:Arg103 4.35 Cd CG A:Arg103 4.76 Cd O A:Hoh903 2.43 Cd O A:Hoh904 2.60 Cd O A:Hoh905 2.88 Cd O A:Hoh907 4.54 Cd O A:Hoh938 4.70 interactive model: Cadmium binding site 2 out of 4 in 1pew Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Cadmium in the PDB 1pew. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Tyr49, B: Glu50, B: Hoh911, B: Hoh918, B: Hoh935, B: Hoh950, conact list: Atom Atom Distance (A) Cd CE2 B:Tyr49 4.38 Cd CD2 B:Tyr49 4.99 Cd OE1 B:Glu50 2.55 Cd OE2 B:Glu50 2.26 Cd CD B:Glu50 2.73 Cd CG B:Glu50 4.24 Cd O B:Hoh911 2.12 Cd O B:Hoh918 2.25 Cd O B:Hoh935 4.41 Cd O B:Hoh950 2.34 interactive model: Cadmium binding site 3 out of 4 in 1pew Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Cadmium in the PDB 1pew. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Arg54, B: Asp60, B: Hoh913, B: Hoh916, B: Hoh938, B: Hoh941, conact list: Atom Atom Distance (A) Cd CZ B:Arg54 4.96 Cd NE B:Arg54 4.36 Cd NH2 B:Arg54 4.53 Cd CB B:Asp60 4.45 Cd OD2 B:Asp60 3.05 Cd OD1 B:Asp60 2.21 Cd CG B:Asp60 3.02 Cd CA B:Asp60 4.97 Cd O B:Hoh913 1.78 Cd O B:Hoh916 2.57 Cd O B:Hoh938 2.27 Cd O B:Hoh941 2.27 interactive model: Cadmium binding site 4 out of 4 in 1pew Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Cadmium in the PDB 1pew. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Cadmium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Asp85, B: Tyr87, B: Hoh907, B: Hoh920, conact list: Atom Atom Distance (A) Cd CB B:Asp85 4.26 Cd OD2 B:Asp85 2.54 Cd OD1 B:Asp85 2.50 Cd CG B:Asp85 2.85 Cd CZ B:Tyr87 4.94 Cd OH B:Tyr87 3.72 Cd O B:Hoh907 4.44 Cd O B:Hoh920 4.26 interactive model: