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Cadmium in PDB 1qjk: Metallothionein Mta From Sea Urchin (Alpha Domain)

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Metallothionein Mta From Sea Urchin (Alpha Domain) (pdb code 1qjk). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 4 binding sites of Cadmium where determined in the Metallothionein Mta From Sea Urchin (Alpha Domain), PDB code: 1qjk:
Jump to Cadmium binding site number: 1; 2; 3; 4;

Cadmium binding site 1 out of 4 in 1qjk

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Cadmium binding site 1 out of 4 in the Metallothionein Mta From Sea Urchin (Alpha Domain)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Metallothionein Mta From Sea Urchin (Alpha Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd104

b:0.0
occ:1.00
SG A:CYS28 2.5 0.0 1.0
SG A:CYS29 2.6 0.0 1.0
SG A:CYS34 2.6 0.0 1.0
SG A:CYS6 2.7 0.0 1.0
HB2 A:CYS34 3.1 0.0 1.0
O A:CYS28 3.1 0.0 1.0
HB2 A:CYS8 3.2 0.0 1.0
C A:CYS28 3.4 0.0 1.0
CB A:CYS34 3.4 0.0 1.0
HB2 A:CYS28 3.5 0.0 1.0
HB2 A:CYS6 3.5 0.0 1.0
HB2 A:CYS29 3.5 0.0 1.0
CB A:CYS28 3.5 0.0 1.0
CB A:CYS29 3.6 0.0 1.0
CB A:CYS6 3.7 0.0 1.0
HB3 A:CYS8 3.9 0.0 1.0
HA A:CYS6 3.9 0.0 1.0
N A:CYS29 3.9 0.0 1.0
CB A:CYS8 4.0 0.0 1.0
CA A:CYS28 4.0 0.0 1.0
HB3 A:CYS34 4.1 0.0 1.0
CD A:CD106 4.1 0.0 1.0
HA A:CYS23 4.2 0.0 1.0
CA A:CYS29 4.2 0.0 1.0
HA A:CYS29 4.2 0.0 1.0
H A:CYS8 4.3 0.0 1.0
CD A:CD105 4.3 0.0 1.0
CA A:CYS6 4.4 0.0 1.0
H A:CYS28 4.4 0.0 1.0
HA A:CYS34 4.5 0.0 1.0
HB3 A:CYS28 4.5 0.0 1.0
H A:CYS29 4.6 0.0 1.0
HB3 A:CYS6 4.6 0.0 1.0
HB3 A:CYS29 4.6 0.0 1.0
CD A:CD107 4.6 0.0 1.0
CA A:CYS34 4.6 0.0 1.0
HA2 A:GLY26 4.6 0.0 1.0
N A:CYS28 4.7 0.0 1.0
SG A:CYS15 4.8 0.0 1.0
SG A:CYS8 4.9 0.0 1.0
H A:CYS35 4.9 0.0 1.0
HA A:CYS28 5.0 0.0 1.0
SG A:CYS17 5.0 0.0 1.0

Cadmium binding site 2 out of 4 in 1qjk

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Cadmium binding site 2 out of 4 in the Metallothionein Mta From Sea Urchin (Alpha Domain)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Metallothionein Mta From Sea Urchin (Alpha Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd105

b:0.0
occ:1.00
SG A:CYS22 2.5 0.0 1.0
SG A:CYS17 2.6 0.0 1.0
SG A:CYS28 2.6 0.0 1.0
SG A:CYS23 2.6 0.0 1.0
HA A:CYS23 3.1 0.0 1.0
N A:CYS23 3.2 0.0 1.0
HB3 A:CYS28 3.3 0.0 1.0
HB2 A:CYS17 3.4 0.0 1.0
C A:CYS22 3.4 0.0 1.0
CB A:CYS28 3.5 0.0 1.0
H A:CYS23 3.5 0.0 1.0
CA A:CYS23 3.5 0.0 1.0
HB2 A:GLN20 3.6 0.0 1.0
HB2 A:CYS22 3.6 0.0 1.0
CB A:CYS22 3.6 0.0 1.0
CB A:CYS17 3.6 0.0 1.0
CB A:CYS23 3.7 0.0 1.0
HB2 A:CYS28 3.7 0.0 1.0
O A:CYS22 3.8 0.0 1.0
O A:CYS17 3.9 0.0 1.0
CA A:CYS22 4.0 0.0 1.0
CD A:CD106 4.1 0.0 1.0
HB2 A:CYS23 4.3 0.0 1.0
CD A:CD104 4.3 0.0 1.0
HB3 A:CYS17 4.4 0.0 1.0
H A:CYS22 4.4 0.0 1.0
C A:CYS17 4.4 0.0 1.0
N A:CYS22 4.5 0.0 1.0
CB A:GLN20 4.5 0.0 1.0
HB3 A:CYS22 4.5 0.0 1.0
HB3 A:CYS23 4.6 0.0 1.0
HB3 A:GLN20 4.6 0.0 1.0
OE1 A:GLN20 4.6 0.0 1.0
CA A:CYS17 4.6 0.0 1.0
H A:CYS28 4.7 0.0 1.0
HB2 A:CYS6 4.7 0.0 1.0
SG A:CYS15 4.8 0.0 1.0
CA A:CYS28 4.9 0.0 1.0
SG A:CYS6 4.9 0.0 1.0
H A:CYS17 5.0 0.0 1.0
HA A:CYS22 5.0 0.0 1.0
C A:CYS23 5.0 0.0 1.0

Cadmium binding site 3 out of 4 in 1qjk

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Cadmium binding site 3 out of 4 in the Metallothionein Mta From Sea Urchin (Alpha Domain)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Metallothionein Mta From Sea Urchin (Alpha Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd106

b:0.0
occ:1.00
SG A:CYS6 2.6 0.0 1.0
SG A:CYS23 2.6 0.0 1.0
SG A:CYS9 2.6 0.0 1.0
HB3 A:CYS8 2.7 0.0 1.0
SG A:CYS15 2.7 0.0 1.0
H A:CYS9 3.3 0.0 1.0
HB2 A:CYS9 3.5 0.0 1.0
HB3 A:CYS23 3.5 0.0 1.0
HB2 A:CYS15 3.6 0.0 1.0
CB A:CYS9 3.6 0.0 1.0
HB3 A:CYS6 3.6 0.0 1.0
HA A:PHE18 3.7 0.0 1.0
CB A:CYS15 3.7 0.0 1.0
CB A:CYS8 3.7 0.0 1.0
CB A:CYS23 3.7 0.0 1.0
CB A:CYS6 3.8 0.0 1.0
N A:CYS9 3.8 0.0 1.0
HB3 A:CYS15 3.9 0.0 1.0
HB2 A:CYS8 3.9 0.0 1.0
HA A:CYS23 4.0 0.0 1.0
CD A:CD104 4.1 0.0 1.0
CD A:CD105 4.1 0.0 1.0
HB2 A:CYS6 4.2 0.0 1.0
CA A:CYS9 4.3 0.0 1.0
C A:CYS8 4.5 0.0 1.0
SG A:CYS17 4.5 0.0 1.0
CA A:CYS23 4.5 0.0 1.0
HB2 A:CYS23 4.6 0.0 1.0
O A:CYS6 4.6 0.0 1.0
HB3 A:CYS9 4.6 0.0 1.0
CD A:CD107 4.6 0.0 1.0
HA A:CYS9 4.6 0.0 1.0
CA A:CYS8 4.6 0.0 1.0
CA A:PHE18 4.7 0.0 1.0
SG A:CYS28 4.7 0.0 1.0
SG A:CYS8 4.7 0.0 1.0
N A:PHE18 4.9 0.0 1.0
H A:CYS17 4.9 0.0 1.0
SG A:CYS34 4.9 0.0 1.0
H A:CYS8 4.9 0.0 1.0
O A:CYS17 4.9 0.0 1.0
C A:CYS17 5.0 0.0 1.0

Cadmium binding site 4 out of 4 in 1qjk

Go back to Cadmium Binding Sites List in 1qjk
Cadmium binding site 4 out of 4 in the Metallothionein Mta From Sea Urchin (Alpha Domain)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 4 of Metallothionein Mta From Sea Urchin (Alpha Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd107

b:0.0
occ:1.00
HA A:CYS15 2.3 0.0 1.0
SG A:CYS35 2.5 0.0 1.0
SG A:CYS8 2.6 0.0 1.0
SG A:CYS15 2.6 0.0 1.0
SG A:CYS34 2.7 0.0 1.0
H A:ALA16 3.2 0.0 1.0
CA A:CYS15 3.3 0.0 1.0
CB A:CYS15 3.4 0.0 1.0
H A:CYS35 3.4 0.0 1.0
HB3 A:CYS34 3.5 0.0 1.0
CB A:CYS35 3.6 0.0 1.0
HB3 A:CYS8 3.6 0.0 1.0
HB2 A:CYS35 3.6 0.0 1.0
N A:CYS35 3.6 0.0 1.0
O A:GLU14 3.6 0.0 1.0
CB A:CYS8 3.6 0.0 1.0
HB2 A:CYS15 3.7 0.0 1.0
CB A:CYS34 3.7 0.0 1.0
HB2 A:CYS8 3.9 0.0 1.0
HA A:CYS35 3.9 0.0 1.0
N A:ALA16 4.0 0.0 1.0
CA A:CYS35 4.0 0.0 1.0
C A:CYS15 4.2 0.0 1.0
C A:CYS34 4.2 0.0 1.0
N A:CYS15 4.2 0.0 1.0
C A:GLU14 4.3 0.0 1.0
H A:CYS17 4.3 0.0 1.0
HB3 A:CYS15 4.4 0.0 1.0
HB3 A:CYS35 4.6 0.0 1.0
CA A:CYS34 4.6 0.0 1.0
HB2 A:CYS34 4.6 0.0 1.0
CD A:CD106 4.6 0.0 1.0
CD A:CD104 4.6 0.0 1.0
HB3 A:ALA16 4.7 0.0 1.0
SG A:CYS17 4.8 0.0 1.0
O A:CYS34 4.9 0.0 1.0
HA A:CYS34 5.0 0.0 1.0

Reference:

R.Riek, B.Precheur, Y.Wang, E.A.Mackay, G.Wider, P.Guntert, A.Liu, J.H.Kagi, K.Wuthrich. uc(Nmr) Structure of the Sea Urchin (Strongylocentrotus Purpuratus) Metallothionein Mta. J. Mol. Biol. V. 291 417 1999.
ISSN: ISSN 0022-2836
PubMed: 10438629
DOI: 10.1006/JMBI.1999.2967
Page generated: Fri Aug 28 12:22:24 2020
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