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Cadmium in PDB 1qjl: Metallothionein Mta From Sea Urchin (Beta Domain)

Cadmium Binding Sites:

The binding sites of Cadmium atom in the Metallothionein Mta From Sea Urchin (Beta Domain) (pdb code 1qjl). This binding sites where shown within 5.0 Angstroms radius around Cadmium atom.
In total 3 binding sites of Cadmium where determined in the Metallothionein Mta From Sea Urchin (Beta Domain), PDB code: 1qjl:
Jump to Cadmium binding site number: 1; 2; 3;

Cadmium binding site 1 out of 3 in 1qjl

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Cadmium binding site 1 out of 3 in the Metallothionein Mta From Sea Urchin (Beta Domain)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 1 of Metallothionein Mta From Sea Urchin (Beta Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd101

b:0.0
occ:1.00
SG A:CYS49 2.5 0.0 1.0
SG A:CYS45 2.6 0.0 1.0
SG A:CYS51 2.6 0.0 1.0
SG A:CYS64 2.7 0.0 1.0
HB2 A:CYS51 3.1 0.0 1.0
HB3 A:CYS49 3.4 0.0 1.0
CB A:CYS51 3.5 0.0 1.0
HB3 A:CYS45 3.5 0.0 1.0
HB3 A:CYS64 3.6 0.0 1.0
CB A:CYS49 3.6 0.0 1.0
CB A:CYS45 3.6 0.0 1.0
CB A:CYS64 3.7 0.0 1.0
HB2 A:CYS45 3.9 0.0 1.0
HB2 A:CYS49 4.0 0.0 1.0
HB2 A:CYS64 4.0 0.0 1.0
HB3 A:CYS51 4.2 0.0 1.0
HB3 A:CYS43 4.2 0.0 1.0
CD A:CD103 4.2 0.0 1.0
H A:CYS51 4.4 0.0 1.0
CD A:CD102 4.4 0.0 1.0
CA A:CYS51 4.5 0.0 1.0
HA A:CYS51 4.5 0.0 1.0
N A:CYS51 4.6 0.0 1.0
SG A:CYS43 4.7 0.0 1.0
CA A:CYS49 4.9 0.0 1.0
CB A:CYS43 5.0 0.0 1.0

Cadmium binding site 2 out of 3 in 1qjl

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Cadmium binding site 2 out of 3 in the Metallothionein Mta From Sea Urchin (Beta Domain)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 2 of Metallothionein Mta From Sea Urchin (Beta Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd102

b:0.0
occ:1.00
SG A:CYS38 2.6 0.0 1.0
SG A:CYS55 2.6 0.0 1.0
SG A:CYS43 2.6 0.0 1.0
SG A:CYS51 2.6 0.0 1.0
HB3 A:ASN40 3.2 0.0 1.0
HB3 A:CYS51 3.4 0.0 1.0
HB2 A:CYS38 3.4 0.0 1.0
HB2 A:CYS55 3.5 0.0 1.0
HA A:CYS55 3.6 0.0 1.0
HB2 A:CYS43 3.6 0.0 1.0
HD21 A:ASN40 3.6 0.0 1.0
CB A:CYS43 3.6 0.0 1.0
CB A:CYS51 3.6 0.0 1.0
CB A:CYS38 3.6 0.0 1.0
CB A:CYS55 3.6 0.0 1.0
HB3 A:CYS43 3.7 0.0 1.0
HB3 A:CYS38 4.1 0.0 1.0
CA A:CYS55 4.2 0.0 1.0
CB A:ASN40 4.2 0.0 1.0
H A:SER56 4.2 0.0 1.0
HB2 A:ASN40 4.3 0.0 1.0
HB2 A:CYS51 4.3 0.0 1.0
CD A:CD101 4.4 0.0 1.0
ND2 A:ASN40 4.4 0.0 1.0
CD A:CD103 4.5 0.0 1.0
HB2 A:CYS57 4.5 0.0 1.0
HB3 A:CYS55 4.6 0.0 1.0
HA A:CYS51 4.7 0.0 1.0
O A:ASN40 4.7 0.0 1.0
CA A:CYS51 4.8 0.0 1.0
H A:ASN40 4.8 0.0 1.0
HA A:CYS38 4.9 0.0 1.0
CA A:CYS38 4.9 0.0 1.0
CG A:ASN40 4.9 0.0 1.0
N A:SER56 5.0 0.0 1.0
SG A:CYS64 5.0 0.0 1.0

Cadmium binding site 3 out of 3 in 1qjl

Go back to Cadmium Binding Sites List in 1qjl
Cadmium binding site 3 out of 3 in the Metallothionein Mta From Sea Urchin (Beta Domain)


Mono view


Stereo pair view

A full contact list of Cadmium with other atoms in the Cd binding site number 3 of Metallothionein Mta From Sea Urchin (Beta Domain) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cd103

b:0.0
occ:1.00
SG A:CYS62 2.5 0.0 1.0
SG A:CYS64 2.6 0.0 1.0
SG A:CYS57 2.6 0.0 1.0
SG A:CYS43 2.7 0.0 1.0
HA A:CYS43 3.2 0.0 1.0
HB2 A:CYS64 3.3 0.0 1.0
H A:CYS64 3.5 0.0 1.0
CB A:CYS64 3.5 0.0 1.0
HA A:CYS62 3.5 0.0 1.0
HB2 A:CYS57 3.6 0.0 1.0
CB A:CYS62 3.6 0.0 1.0
HB2 A:CYS62 3.6 0.0 1.0
CB A:CYS57 3.6 0.0 1.0
H A:ALA63 3.7 0.0 1.0
CB A:CYS43 3.7 0.0 1.0
HB3 A:CYS43 3.8 0.0 1.0
N A:CYS64 3.9 0.0 1.0
HB3 A:CYS57 3.9 0.0 1.0
CA A:CYS43 4.0 0.0 1.0
CA A:CYS62 4.0 0.0 1.0
H A:LYS44 4.0 0.0 1.0
N A:ALA63 4.1 0.0 1.0
CA A:CYS64 4.1 0.0 1.0
CD A:CD101 4.2 0.0 1.0
HA A:CYS64 4.2 0.0 1.0
SG A:CYS45 4.3 0.0 1.0
C A:CYS62 4.4 0.0 1.0
HB3 A:CYS64 4.4 0.0 1.0
CD A:CD102 4.5 0.0 1.0
HB3 A:CYS62 4.6 0.0 1.0
HD21 A:ASN40 4.7 0.0 1.0
C A:ALA63 4.7 0.0 1.0
HB2 A:CYS43 4.7 0.0 1.0
N A:LYS44 4.8 0.0 1.0
H A:SER56 4.8 0.0 1.0
C A:CYS43 5.0 0.0 1.0
N A:CYS43 5.0 0.0 1.0

Reference:

R.Riek, B.Precheur, Y.Wang, E.A.Mackay, G.Wider, P.Guntert, A.Liu, J.H.Kagi, K.Wuthrich. uc(Nmr) Structure of the Sea Urchin (Strongylocentrotus Purpuratus) Metallothionein Mta. J. Mol. Biol. V. 291 417 1999.
ISSN: ISSN 0022-2836
PubMed: 10438629
DOI: 10.1006/JMBI.1999.2967
Page generated: Fri Aug 28 12:22:37 2020
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